View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7420_low_4 (Length: 344)
Name: NF7420_low_4
Description: NF7420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7420_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 4952410 - 4952100
Alignment:
| Q |
18 |
aatatcctcaaagtctaataaaattctaaccatggttcctagagaaatcagaggagtcaattatctaactcctcctgagaattcattccaagttcaacca |
117 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4952410 |
aataccctcaaagtctaataaaattctagccatggttcctagtgagatcagaggagtcaattatctaactcctcctgagaattcattccaagttcaacca |
4952311 |
T |
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| Q |
118 |
aactttgtcttaccacagaatgaaattccaaattaccatataaataatcttttaggcagcttaccaaacttccattacccatcatgtttaagcagcaact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4952310 |
aactttgtcttaccacagaatgaaattccaaattaccatataaataatcttttaggcagcttaccaaacttccattacccatcatgtttaagcagcaact |
4952211 |
T |
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| Q |
218 |
caactacttctgatgaagcagatgaacttcagtttaacatcatcgacgaaaggaagcaccgacgaatgatatcaaacagagaatcagctaggagatcaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4952210 |
caactacttctgatgaagcagatgaacttcagtttaacatcatcgatgaaaggaagcaccgacgaatgatatcaaacagagaatcagctaggagatcaag |
4952111 |
T |
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| Q |
318 |
gatgagaaaac |
328 |
Q |
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|||||| |||| |
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| T |
4952110 |
gatgaggaaac |
4952100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 35 - 201
Target Start/End: Original strand, 10483249 - 10483415
Alignment:
| Q |
35 |
ataaaattctaaccatggttcctagagaaatcagaggagtcaattatctaactcctcctgagaattcattccaagttcaaccaaactttgtcttaccaca |
134 |
Q |
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| T |
10483249 |
ataaaattctagccatggttcctagtgagatgagaggagtcaattatctaactcctcttgagaattcattccatgttcaaccaaactttgtattgccaca |
10483348 |
T |
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| Q |
135 |
gaatgaaattccaaattaccatataaataatcttttaggcagcttaccaaacttccattacccatca |
201 |
Q |
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| T |
10483349 |
gaatgaaattccaaattaccatctaagtaatattttaggtactttaccaaacttccattacccatca |
10483415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 199 - 328
Target Start/End: Original strand, 10483443 - 10483572
Alignment:
| Q |
199 |
tcatgtttaagcagcaactcaactacttctgatgaagcagatgaacttcagtttaacatcatcgacgaaaggaagcaccgacgaatgatatcaaacagag |
298 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10483443 |
tcatgtttaagtagcaactcaactacttctgatgaagcagatgaacttcagttcaatatcatcgacgaaaggaagcaccgacgaatgatatcaaatagag |
10483542 |
T |
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| Q |
299 |
aatcagctaggagatcaaggatgagaaaac |
328 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
10483543 |
aatcagctaggagatcaaggatgaggaaac |
10483572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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