View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7421_low_1 (Length: 587)
Name: NF7421_low_1
Description: NF7421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7421_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Complemental strand, 37490746 - 37490176
Alignment:
| Q |
18 |
gcactgatatctaagattgactactatgagtcttat-------gacaaaaatattccacttacatgtgtgagttttccgatggctaatgttgtttcttct |
110 |
Q |
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| T |
37490746 |
gcactgatatccaagattgactactacgagtcttatctcaactgacaaaaatattccacttatatgtgtgagttttctgatggctaatgttgtttcttct |
37490647 |
T |
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| Q |
111 |
ttctaccgaataaaataatttgtgtagattttgtacaaatatctttttgtttcaaagaacctggtagtgaattactcttttcttcctttccatgtcaagg |
210 |
Q |
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| T |
37490646 |
ttctaccgaataaaataatttgtgtggattttgtacaaatatctttttgtttcaaagaacctggtagtgaattactcttttcttcctttccatgtcaagg |
37490547 |
T |
|
| Q |
211 |
ctgcattatatctttccaatttc-------------tataaaacagtggtttctggagtccctactcaagtaatgaaataggaaggtttttggtattata |
297 |
Q |
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| T |
37490546 |
ctgcattatatctttccaatttcaatattgaatttctataaaacagtggtttctggagtccctactcaagtaatgaaataggaaggttttgggtattata |
37490447 |
T |
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| Q |
298 |
tagttgcatgcatgatgagaatgttttggcatatacttgaaattcgaaggtaaattttatgtgttgttttctttattgagtagtactagtcgtacatacc |
397 |
Q |
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| T |
37490446 |
tagttgcatgcatgatgagaatgttttggcatatacttgaaattcgaaggtaaattttatgtgttgttt-ctttattgagtagtactagtcgtacatacc |
37490348 |
T |
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| Q |
398 |
atgaaagagatggtcccaatcattttatttcacgtacgtgaaagcgaaagttaattgttggatattcttctttgaaggaattgttggatattctcactaa |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37490347 |
atgaaagagatggtcccaatcattttatttcacgtacgtgaaagcgaaagttaattgttggatattcttctttgaaggaattgttggatattctcagtaa |
37490248 |
T |
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| Q |
498 |
taataaaatgttggannnnnnnaccattttaatatattgacatgaaaaattgaagctatagaaagtataggg |
569 |
Q |
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| T |
37490247 |
taataaaatgttggagggggggaccattttaatatattgacatgaaaaattgaagctatagaaagtataggg |
37490176 |
T |
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