View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7422_high_1 (Length: 403)
Name: NF7422_high_1
Description: NF7422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7422_high_1 |
 | |
|
| [»] scaffold0557 (2 HSPs) |
| | |
|
| [»] scaffold0726 (2 HSPs) |
| | |
|
| [»] scaffold0159 (1 HSPs) |
| | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
| [»] scaffold0214 (4 HSPs) |
| | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
| [»] scaffold0590 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 29468044 - 29468334
Alignment:
| Q |
1 |
tttgaagttataagaaaatggtgctacattatcgacaacaaagcgtgaatgnnnnnnngaaaaggggtcattgtatgcaggcgctcttgccttatatttc |
100 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
29468044 |
tttgaagttatcaaaaaatggtgctacattatcgacaacaaagcgtgaatgaaaaaaaggaaaggggtcgttgtatgcaggcgctcttgccttctatttc |
29468143 |
T |
|
| Q |
101 |
tccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatatcgcaaa |
199 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29468144 |
tccaacatttctcaaacaacaacatcaattatatgccccagtttaattaacattccacttgctatgtcacattgactttttcaatcaaaaatatcgcaaa |
29468243 |
T |
|
| Q |
200 |
gtatgagaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagacataaatgtattatcaaag |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
29468244 |
gtatgagaagtgatatgactaatgtgtaaatattctttcactctttttgaaatgtcttcgtcatttgaaagacataaatgtgttatcaaag |
29468334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 62 - 289
Target Start/End: Original strand, 5782869 - 5783099
Alignment:
| Q |
62 |
aaggggtcattgtatgcaggcgctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttg |
160 |
Q |
| |
|
||||||| ||||| | ||| |||||||| || ||||||||||| |||||||||| || ||||||| |||||||||| ||||||||||| ||||| |||| |
|
|
| T |
5782869 |
aaggggtggttgtaggtaggggctcttgcattctatttctccaagatttctcaaacaagaacatcacttatatgccccagtttaattaacattccacttg |
5782968 |
T |
|
| Q |
161 |
ctatgtcacattgactttttcaatcaaaaatatcgcaaagtatg-agaagtgatatgactaatgtgtaaatattc-tttcaatctttttgaaatgtcttc |
258 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| |||||||||| | |||||| |||||||||||||||| |||| ||||| |||||||||||||||| | |
|
|
| T |
5782969 |
ctatgttacattgactttttcaatgaaaaatattgcaaagtatgaataagtgacatgactaatgtgtaaacattcttttcactctttttgaaatgtctac |
5783068 |
T |
|
| Q |
259 |
gtcctttgaaagacataaatgtattatcaaa |
289 |
Q |
| |
|
|||||||| ||||| | |||| |||||||| |
|
|
| T |
5783069 |
gtcctttgcaagactttgatgtgttatcaaa |
5783099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 71 - 290
Target Start/End: Complemental strand, 25417778 - 25417557
Alignment:
| Q |
71 |
ttgtatgcaggcgctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcac |
169 |
Q |
| |
|
||||||||| | ||||||||||| |||| |||||| |||||||||| || ||||||| |||||||||| || || |||| ||||| |||||||||| || |
|
|
| T |
25417778 |
ttgtatgcatgggctcttgccttttatt-ctccaaaatttctcaaacaataacatcacttatatgccccagattggttaacattccacttgctatgttac |
25417680 |
T |
|
| Q |
170 |
attgacttttt-caatcaaaaatatcgcaaagtatgag-aagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttga |
267 |
Q |
| |
|
|| ||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25417679 |
atcaacttttttcaatcaaaaatatctcaaagtatgaataagtgatatgactaatgtgtaaatattctttcactctttttgaaatgtcttcgtcctttgc |
25417580 |
T |
|
| Q |
268 |
aagacataaatgtattatcaaag |
290 |
Q |
| |
|
||||| | |||| ||||||||| |
|
|
| T |
25417579 |
aagacttggatgtgttatcaaag |
25417557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 95 - 290
Target Start/End: Original strand, 13363959 - 13364155
Alignment:
| Q |
95 |
tatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatat |
193 |
Q |
| |
|
||||||||||| |||| ||||| || |||| || |||||||||| |||| |||||| ||| | |||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
13363959 |
tatttctccaagatttgtcaaacaagaacaccacttatatgccccagtt-aattaacatttcacttgttatgttacattgactttttcaatcaaaaatat |
13364057 |
T |
|
| Q |
194 |
cgcaaagtatgag-aagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagacataaatgtattatcaaag |
290 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||| ||||||||| |
|
|
| T |
13364058 |
cgcaaagtatgaataagtgatatgattaatgtgtaaatattttttcactctttttgaaatgtcttcgtcctttgaaagacttggatgtgttatcaaag |
13364155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 29468390 - 29468432
Alignment:
| Q |
346 |
gtgacaaactcaaatggcttgataaataatatagagcatatgt |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29468390 |
gtgacaaactcaaatggcttgataaataatatagagcatatgt |
29468432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 25417504 - 25417464
Alignment:
| Q |
346 |
gtgacaaactcaaatggcttgataaataatatagagcatat |
386 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
25417504 |
gtgacagactcaaatggcttgagaaataatatagagcatat |
25417464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 42882363 - 42882653
Alignment:
| Q |
1 |
tttgaagttataagaaaatggtgctacattatcgacaacaaagcgtgaatgnnnnnnngaaaaggggtcattgtatgcaggcgctcttgccttatatttc |
100 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
42882363 |
tttgaagttatcaaaaaatggtgctacattatcgacaacaaagcgtgaatgaaaaaaaggaaaggggtcgttgtatgcaggcgctcttgccttctatttc |
42882462 |
T |
|
| Q |
101 |
tccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatatcgcaaa |
199 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||| | ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42882463 |
tccaacatttatcaaacaacaacatcaattatatgctccagtttaattaacattccacttgctatgtcacattgactttttcaatcaaaaatatcgcaaa |
42882562 |
T |
|
| Q |
200 |
gtatgagaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagacataaatgtattatcaaag |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42882563 |
gtatgagaagtgatatgactaatgtgtaaatattctttcactctttttgaaatgtcttcgtcctttgaaagacataaatgtgttatcaaag |
42882653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 38926122 - 38925935
Alignment:
| Q |
71 |
ttgtatgcaggcgctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcac |
169 |
Q |
| |
|
||||||||||| |||||||| || |||||||| || |||||| ||| || ||||||| |||| ||| ||||||||||| |||| ||| |||||| || |
|
|
| T |
38926122 |
ttgtatgcaggggctcttgcgttttatttctcaaagatttctaaaacaagaacatcacttat---ccccagtttaattaacattcaacttactatgttac |
38926026 |
T |
|
| Q |
170 |
attgactttttcaatcaaaaatatcgcaaagtatg-agaagtgatatgactaa--tgtgtaaatattctttcaatctttttgaaatgtctt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | ||||||||||||||| |||||||||||||||||| | ||||||||||||||| |
|
|
| T |
38926025 |
attgactttttcaatcaaaaatatcgcaaattatgaataagtgatatgactaatgtgtgtaaatattctttcactatttttgaaatgtctt |
38925935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 123 - 255
Target Start/End: Original strand, 22545234 - 22545367
Alignment:
| Q |
123 |
atcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatatcgcaaagtatg-agaagtgatatgactaa |
221 |
Q |
| |
|
|||| |||||||| | |||||||||| ||||| ||||||| | |||| |||||||||||||||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
22545234 |
atcacttatatgctccggtttaattaacattccatttgctatattacatcgactttttcaatcaaaaatatcccaaagtatgaataagtgatatgactaa |
22545333 |
T |
|
| Q |
222 |
tgtgtaaatattctttcaatctttttgaaatgtc |
255 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
22545334 |
tgtgtaaatattatttcactctttgtgaaatgtc |
22545367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 32726243 - 32726383
Alignment:
| Q |
87 |
ttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatc |
185 |
Q |
| |
|
||||||||||||| ||||| |||||||||| || ||||||| |||||||||| |||||||||| ||||| | | | |||| | ||||||||||||| || |
|
|
| T |
32726243 |
ttgccttatatttttccaaaatttctcaaacaagaacatcacttatatgccccagtttaattattattccacgttccatgttagattgactttttcagtc |
32726342 |
T |
|
| Q |
186 |
aaaaatatcgcaaagtatg-agaagtgatatgactaatgtg |
225 |
Q |
| |
|
|||||| |||||||||||| | |||| |||||||||||||| |
|
|
| T |
32726343 |
aaaaatttcgcaaagtatgaataagtaatatgactaatgtg |
32726383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 42882709 - 42882751
Alignment:
| Q |
346 |
gtgacaaactcaaatggcttgataaataatatagagcatatgt |
388 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42882709 |
gtgacaaactcaaatgacttgataaataatatagagcatatgt |
42882751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 8224498 - 8224208
Alignment:
| Q |
1 |
tttgaagttataagaaaatggtgctacattatcgacaacaaagcgtgaatgnnnnnnngaaaaggggtcattgtatgcaggcgctcttgccttatatttc |
100 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
8224498 |
tttgaagttatcaaaaaatggtgctacattatcgacaacaaagcgtgaatgaaaaaaaggaaaggggtcgttgcatgcaggcgctcttgccttctatttc |
8224399 |
T |
|
| Q |
101 |
tccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatatcgcaaa |
199 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8224398 |
tccaacatttatcaaacaacaacatcaattatatgccccagtttaattaacattccacttgctatgtcacattgactttttcaatcaaaaatatcgcaaa |
8224299 |
T |
|
| Q |
200 |
gtatgagaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagacataaatgtattatcaaag |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8224298 |
gtatgagaagtgatatgactaatgtgtaaatatgctttcactccttttgaaatgtcttcgtcctttgaaagacataaatgtgttatcaaag |
8224208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 7964238 - 7964529
Alignment:
| Q |
1 |
tttgaagttataagaaaatggtgctacattatcgacaacaaagcgtgaatgnnnnnnn-gaaaaggggtcattgtatgcaggcgctcttgccttatattt |
99 |
Q |
| |
|
|||||||| || | ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
7964238 |
tttgaagtaatcaaaaaatggtgctacattatcgacaacaaagcgtgaatgaaaaaaaaggaaaggggtcgttgtatgcaggcgctcttgccttctattt |
7964337 |
T |
|
| Q |
100 |
ctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatatcgcaa |
198 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
7964338 |
ctccaacatttctcaaacaacaacatcaattatatgccccagtttaattaacattccacttgctatgttacattgactttttcaatcaaaaatattgcaa |
7964437 |
T |
|
| Q |
199 |
agtatgagaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagacataaatgtattatcaaag |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7964438 |
agtatgagaagtgatatgactaatgtgtaaatattctttcactctttttgaaatgtcttcgtcctttgaaagacataaatgtgttatcaaag |
7964529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 71 - 266
Target Start/End: Complemental strand, 22932738 - 22932542
Alignment:
| Q |
71 |
ttgtatgcaggcgctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcac |
169 |
Q |
| |
|
||||||||||| |||||||||| ||| |||||| |||||||||| || ||||||| |||||||||| | || |||| ||||| ||||||||| || |
|
|
| T |
22932738 |
ttgtatgcagggactcttgccttttatc-ctccaaaatttctcaaacaataacatcacttatatgccccggattggttaacattccacttgctatgctac |
22932640 |
T |
|
| Q |
170 |
attgactttttcaatcaaaaatatcgcaaagtatgag-aagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttg |
266 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22932639 |
atcaactttttcaatcaaaaatatctcaaagtatgaataagtgatatgactaatgcgtaaatattctttcactctttttgaaatgtcttcgtcctttg |
22932542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 71 - 290
Target Start/End: Original strand, 43974074 - 43974297
Alignment:
| Q |
71 |
ttgtatgcaggcgctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcc-caagtttaattaaaattccccttgctat---- |
164 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||| ||| ||||| || |||| || ||||||||| | ||||||||||| ||| | |||||||| |
|
|
| T |
43974074 |
ttgtatgcaagggctcttgcctattatttctccaa--tttgtcaaacaagaacaccacttatatgcctccagtttaattaacatttcacttgctatatat |
43974171 |
T |
|
| Q |
165 |
gtcacattgactttttcaatcaaaaatatcgcaaagtatgag-aagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcct |
263 |
Q |
| |
|
|| |||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
43974172 |
gttacattgactttttcaatcaaaa-tatcacaaagtatgaataagtgatatgactaatgtgtaaatattctttcactctttttgaaatgtctttgtcct |
43974270 |
T |
|
| Q |
264 |
ttgaaagacataaatgtattatcaaag |
290 |
Q |
| |
|
||| ||||| | |||| ||||||||| |
|
|
| T |
43974271 |
ttgcaagacttggatgtgttatcaaag |
43974297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 7964587 - 7964629
Alignment:
| Q |
346 |
gtgacaaactcaaatggcttgataaataatatagagcatatgt |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7964587 |
gtgacaaactcaaatggcttgataaataatatagagcatatgt |
7964629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 8224152 - 8224110
Alignment:
| Q |
346 |
gtgacaaactcaaatggcttgataaataatatagagcatatgt |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8224152 |
gtgacaaactcaaatggcttgataaataatatagagcatatgt |
8224110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 16046673 - 16046735
Alignment:
| Q |
141 |
tttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatatcgcaaagtat |
203 |
Q |
| |
|
||||||||| ||||| || ||||| | ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16046673 |
tttaattaacattccactagctatattacattgactttttcaatcaaaaatatcacaaagtat |
16046735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 22932465 - 22932425
Alignment:
| Q |
346 |
gtgacaaactcaaatggcttgataaataatatagagcatat |
386 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| |||| |
|
|
| T |
22932465 |
gtgacagactcaaatggcttgagaaataatatagagaatat |
22932425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 7206 - 6917
Alignment:
| Q |
1 |
tttgaagttataagaaaatggtgctacattatcgacaacaaagcgtgaatgnnnnnnngaaaaggggtcattgtatgcaggcgctcttgccttatatttc |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
7206 |
tttgaagttatcgaaaaatggtgctacattatcgacaacaaagcgtgaatgaaaaaaagtaaaggggtcgttgtatgcaggcgctcttgccttctatttc |
7107 |
T |
|
| Q |
101 |
tccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatatcgcaaa |
199 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
7106 |
tccaacatttctcaaacaacaacatcaattaaatgccctagtttaattaacattctacttgctatgtcacattgaatttt-caatcaaaaatattgcaaa |
7008 |
T |
|
| Q |
200 |
gtatgagaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagacataaatgtattatcaaag |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7007 |
gtatgagaagtgatatgactaatgtgtaaatattctttcactcttttttaaatgtcttcgtcctttgaaagacataaatgtgttatcaaag |
6917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 6861 - 6819
Alignment:
| Q |
346 |
gtgacaaactcaaatggcttgataaataatatagagcatatgt |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6861 |
gtgacaaactcaaatggcttgataaataatatagagcatatgt |
6819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 15906384 - 15906675
Alignment:
| Q |
1 |
tttgaagttataagaaaatggtgctacattatcgacaacaaagcgtgaatgnnnnnnnga--aaaggggtcattgtatgcaggcgctcttgccttatatt |
98 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||| |||||||||||| |||| |
|
|
| T |
15906384 |
tttgaagttatcaaaaaatggtgctacattatcaacaacaaagcgtgaatgaaaaaaaaaggaaaggggtcgttgtatgcagccgctcttgccttctatt |
15906483 |
T |
|
| Q |
99 |
tctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatatcgca |
197 |
Q |
| |
|
||||||||||||| |||| |||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15906484 |
tctccaacatttcgcaaacaacaacctcaattatatgccccagtttaattaacattccacttgctatgtcacattgactttttcaatcaaaaatatcgaa |
15906583 |
T |
|
| Q |
198 |
aagtatgagaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagacataaatgtattatcaaa |
289 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15906584 |
aagtatgagaagttatatgactaatgtgtaaatattctttcactctttttgaaatgtcttcgtcctttgaaagacataaatgtgttatcaaa |
15906675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 18716041 - 18715752
Alignment:
| Q |
1 |
tttgaagttataagaaaatggtgctacattatcgacaacaaagcgtgaatgnnnnnnngaaaaggggtcattgtatgcaggcgctcttgccttatatttc |
100 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||||||| ||||| |
|
|
| T |
18716041 |
tttgaagttatcaaaaaatggtgctacattatcgacaacaaagcgtgaatgaaaaaaaggaaaggggtcgttgtatgcaggctctcttgccttctattta |
18715942 |
T |
|
| Q |
101 |
tccaacatttctcaaaaacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatatcgcaaag |
200 |
Q |
| |
|
||| |||||| | ||| | ||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18715941 |
tccgacatttatgaaacaacacaacaattatatgccccagtttaattaacattccacttgctatgtcacattgactttttcaatcaaaaatatcgtaaag |
18715842 |
T |
|
| Q |
201 |
tatgagaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagacataaatgtattatcaaag |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||| ||||||||| |
|
|
| T |
18715841 |
tatgagaagtgatatgactaatgtgtaaatattctttcactctttttgaaatgtcttcttcctttaaaagacataaatgtgttatcaaag |
18715752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 14464258 - 14463969
Alignment:
| Q |
1 |
tttgaagttataagaaaatggtgctacattatcgacaacaaagcgtgaatgnnnnnnngaaaaggggtcattgtatgcaggcgctcttgccttatatttc |
100 |
Q |
| |
|
||||||||||| | ||||||||| ||||| ||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||| |
|
|
| T |
14464258 |
tttgaagttatcaaaaaatggtgttacat-atctacaacaaagcgtgaatgaaaaaaaagaaaggggttgttgtatgcaggtgctcttgccttctatttc |
14464160 |
T |
|
| Q |
101 |
tccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatatcgcaaa |
199 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||||| |||| |
|
|
| T |
14464159 |
tccaagatttctcaaacaacaacatcaattatatgccccagtttaattaacattccacttgctatgtcacattggctttttcaattaaaaatatctcaaa |
14464060 |
T |
|
| Q |
200 |
gtatgagaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagacataaatgtattatcaaag |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
14464059 |
gtatgagaagtgatatgactaatgtgtaaatattctttcactctttttgaaatgtcttcgtcctttgaaagacataaatatgttatcaaag |
14463969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 90 - 290
Target Start/End: Original strand, 18767134 - 18767336
Alignment:
| Q |
90 |
ccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaa |
188 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||| |||| |||||||| | ||||||||||| ||||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
18767134 |
ccttctatttctccaagatttctcaaacaacaatatcacttatatgctccagtttaattaacattcctcttgctatgttacattgaccttttcaatcaaa |
18767233 |
T |
|
| Q |
189 |
aatatcgcaaagtatg-agaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagacataaatgtattatca |
287 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| ||||| | ||||| |||| | |
|
|
| T |
18767234 |
aatatcgcaaagtatgaataagtgatatgactaatgtgaaaacattctttcactctttttgaaatgtcttcgtcctttgcaagacttgaatgtgttatta |
18767333 |
T |
|
| Q |
288 |
aag |
290 |
Q |
| |
|
||| |
|
|
| T |
18767334 |
aag |
18767336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 62 - 290
Target Start/End: Original strand, 21392711 - 21392941
Alignment:
| Q |
62 |
aaggggtcattgtatgcaggcgctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttg |
160 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||| ||||||||||| |||||||||| || ||||| | |||||||||| ||||||||||| ||||| |||| |
|
|
| T |
21392711 |
aaggggtggttgtaggcaggggctcttgccttctatttctccaagatttctcaaacaagaacataacttatatgccccagtttaattaacattccacttg |
21392810 |
T |
|
| Q |
161 |
ctatgtcacattgactttttcaatcaaaaatatcgcaaagtatgag-aagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcg |
259 |
Q |
| |
|
|||||| ||||||| |||||| || || ||||| ||||||||||| |||||| ||||||||||| | || ||||||||| ||||||||||||| ||||| |
|
|
| T |
21392811 |
ctatgttacattgaatttttccatgaagaatattgcaaagtatgaataagtgacatgactaatgtcttaacattctttcactctttttgaaatgccttcg |
21392910 |
T |
|
| Q |
260 |
tcctttgaaagacataaatgtattatcaaag |
290 |
Q |
| |
|
||||||| ||||| || |||| ||||||||| |
|
|
| T |
21392911 |
tcctttgcaagacttagatgtgttatcaaag |
21392941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 92 - 290
Target Start/End: Original strand, 20025223 - 20025424
Alignment:
| Q |
92 |
ttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaa |
190 |
Q |
| |
|
|||||||||||||| |||||||||| || || |||| |||||||||| ||||||||||| | || ||||||||| ||||||||||||||||| ||||| |
|
|
| T |
20025223 |
ttatatttctccaagatttctcaaacaagaatatcacttatatgccccagtttaattaacagtcaatttgctatgttacattgactttttcaataaaaaa |
20025322 |
T |
|
| Q |
191 |
-tatcgcaaagtatgag-aagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagacataaatgtattatcaa |
288 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| | |||| ||||||| |
|
|
| T |
20025323 |
atatcgcaaactatgaataagtgatatgactaatgtgtaaacattctttcattctttttgaaatgtcttcgtcctttgcaagacttggatgttttatcaa |
20025422 |
T |
|
| Q |
289 |
ag |
290 |
Q |
| |
|
|| |
|
|
| T |
20025423 |
ag |
20025424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 123 - 290
Target Start/End: Original strand, 20881416 - 20881581
Alignment:
| Q |
123 |
atcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatatcgcaaagtatg-agaagtgatatgactaa |
221 |
Q |
| |
|
|||| |||||||| | |||||||||| ||||| ||||||| | ||||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
20881416 |
atcacttatatgctccggtttaattaacattccatttgctatattacattgactttttcaatcaaaaatatcccaaagtatgaataagtgatatgactaa |
20881515 |
T |
|
| Q |
222 |
tgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagacataaatgtattatcaaag |
290 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| |||||||||| |||| | |||||||||||||| |
|
|
| T |
20881516 |
tgtgtaaatattctttcactctttgtgaaatg---tcgtcctttgcaagatttggatgtattatcaaag |
20881581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 123 - 255
Target Start/End: Complemental strand, 21683811 - 21683678
Alignment:
| Q |
123 |
atcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatatcgcaaagtatg-agaagtgatatgactaa |
221 |
Q |
| |
|
|||| |||||||| | |||||||||| ||||| ||||||| | ||||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
21683811 |
atcacttatatgctccggtttaattaacattccatttgctatattacattgactttttcaatcaaaaatatcccaaagtatgaataagtgatatgactaa |
21683712 |
T |
|
| Q |
222 |
tgtgtaaatattctttcaatctttttgaaatgtc |
255 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||| |
|
|
| T |
21683711 |
tgtgtaaatattctttcactctttgtgaaatgtc |
21683678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 83 - 272
Target Start/End: Complemental strand, 31569970 - 31569779
Alignment:
| Q |
83 |
gctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatg-cccaagtttaattaaaattccccttgctatgtcacattgacttttt |
180 |
Q |
| |
|
||||||| ||| ||||||| ||| |||||||||| || ||||||| ||||| |||||||| |||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
31569970 |
gctcttgtcttctatttcttcaaaatttctcaaacaagaacatcacatatatatcccaagtt-aattaacattccacttgctatgttacattgacttttt |
31569872 |
T |
|
| Q |
181 |
caatcaaaaatatcgcaaagta-tgagaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagac |
272 |
Q |
| |
|
||||||||||||| |||||||| | | || |||| ||||||| |||||| ||| ||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
31569871 |
caatcaaaaatattgcaaagtatttataaatgatgcgactaatatgtaaacattgtttcactctttttgaaatgtctttgtcctttgcaagac |
31569779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 141 - 266
Target Start/End: Original strand, 23160238 - 23160364
Alignment:
| Q |
141 |
tttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatatcgcaaagta-tgagaagtgatatgactaatgtgtaaatattctttca |
239 |
Q |
| |
|
||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||||| | | | || |||| ||||||| ||||| ||| ||||| |
|
|
| T |
23160238 |
tttaattaacattccacttgctatgttacattgactttttcaatcaaaaatatcacaaagcatttataaatgatgcgactaataggtaaacattgtttca |
23160337 |
T |
|
| Q |
240 |
atctttttgaaatgtcttcgtcctttg |
266 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
23160338 |
ctctttttgaaatgtcttcgtcctttg |
23160364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 18785338 - 18785428
Alignment:
| Q |
83 |
gctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacatt |
172 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| || ||||||| ||||||||| ||||||||||| ||||| |||||||||| ||||| |
|
|
| T |
18785338 |
gctcttgccttctatttctccaaaatttctcaaacaagaacatcacttatatgcctcagtttaattaacattccacttgctatgttacatt |
18785428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 14463914 - 14463872
Alignment:
| Q |
346 |
gtgacaaactcaaatggcttgataaataatatagagcatatgt |
388 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14463914 |
gtgacagactcaaatggcttgataaataatatagagcatatgt |
14463872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 18715696 - 18715654
Alignment:
| Q |
346 |
gtgacaaactcaaatggcttgataaataatatagagcatatgt |
388 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18715696 |
gtgacaaacttaaatggcttgataaataatatagagcatatgt |
18715654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 388
Target Start/End: Original strand, 15906741 - 15906776
Alignment:
| Q |
353 |
actcaaatggcttgataaataatatagagcatatgt |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
15906741 |
actcaaatggcttgataaataatatagagcatatgt |
15906776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 31569707 - 31569671
Alignment:
| Q |
353 |
actcaaatggcttgataaataatatagagcatatgtg |
389 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| |
|
|
| T |
31569707 |
actcaaatggctcgagaaataatatagagcatatgtg |
31569671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 19111401 - 19111693
Alignment:
| Q |
1 |
tttgaagttataagaaaatggtgctacattatcgacaacaaagcgtgaatgnnnnnnnga--aaaggggtcattgtatgcaggcgctcttgccttatatt |
98 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||||||| |||| |
|
|
| T |
19111401 |
tttgaagttatcaaaaaatgatgctacattatcgacaacaaagcgtgaataaaaaaaaaaggaaaggggtcgttgtatgtaggcgctcttgccttctatt |
19111500 |
T |
|
| Q |
99 |
tctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatatcgca |
197 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19111501 |
tctccaacatttctcaaacaacaacatcaattatatgccccaatttaattaacattccacttgctatgtcacattgactttttcaatcaaaaatatcgca |
19111600 |
T |
|
| Q |
198 |
aagtatgagaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagacataaatgtattatcaaag |
290 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
19111601 |
aagtatgagaagtgatatgattaatgtgtaaatattctttcactctttttgaaatgttttcttcctttgaaagacataaatgtgttatcaaag |
19111693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 52374832 - 52374738
Alignment:
| Q |
196 |
caaagtatgagaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagacataaatgtattatcaaag |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52374832 |
caaagtatgagaagtgatatgactaatgtgtaaatattctttcactctttttgaaatgtcttcgtcctttgaaagacataaatgtgttatcaaag |
52374738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 95 - 271
Target Start/End: Original strand, 43593009 - 43593192
Alignment:
| Q |
95 |
tatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaata- |
192 |
Q |
| |
|
||||||||||| |||||||||| || ||||||| |||||||| | ||||||||||| ||||| |||||||||| |||||||||||||||| |||||| | |
|
|
| T |
43593009 |
tatttctccaagatttctcaaataagaacatcacttatatgctccagtttaattaacattccacttgctatgttacattgactttttcaaacaaaaaaaa |
43593108 |
T |
|
| Q |
193 |
----tcgcaaagtatg-agaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaaga |
271 |
Q |
| |
|
|||||||||||| | || ||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
43593109 |
aaactcgcaaagtatgaataactgatatgactaatgtataaatattatttcactctttttgaaatgtcttcgtcctttgcaaga |
43593192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 156 - 265
Target Start/End: Complemental strand, 50377894 - 50377784
Alignment:
| Q |
156 |
ccttgctatgtcacattgactttttcaatcaaaaatatcgcaaagtatgagaa-gtgatatgactaatgtgtaaatattctttcaatctttttgaaatgt |
254 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| ||||| |||||||||| || |||||||| |||||||||||| ||| ||||| | ||||| |||||| |
|
|
| T |
50377894 |
ccttgctatgttaaattgactttttcaatcaaatatatcacaaagtatgaaaaggtgatatgcctaatgtgtaaacattttttcactatttttaaaatgt |
50377795 |
T |
|
| Q |
255 |
cttcgtccttt |
265 |
Q |
| |
|
||||||||||| |
|
|
| T |
50377794 |
cttcgtccttt |
50377784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 19111749 - 19111791
Alignment:
| Q |
346 |
gtgacaaactcaaatggcttgataaataatatagagcatatgt |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19111749 |
gtgacaaactcaaatggcttgataaataatatagtgcatatgt |
19111791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 52374679 - 52374637
Alignment:
| Q |
346 |
gtgacaaactcaaatggcttgataaataatatagagcatatgt |
388 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52374679 |
gtgacaaacttaaatggcttgataaataatatagagcatatgt |
52374637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 62 - 290
Target Start/End: Original strand, 42958046 - 42958276
Alignment:
| Q |
62 |
aaggggtcattgtatgcaggcgctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttg |
160 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||| ||||||||||| |||||||||| || ||||||| ||||||||| ||||||||||| ||||| ||| |
|
|
| T |
42958046 |
aaggggtggttgtaggcaggggctcttgccttctatttctccaaaatttctcaaacaagaacatcacctatatgccccagtttaattaacattccactta |
42958145 |
T |
|
| Q |
161 |
ctatgtcacattgactttttcaatcaaaaatatcgcaaagtatgag-aagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcg |
259 |
Q |
| |
|
|||||| ||||||||| | ||||| |||||||| |||| |||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
42958146 |
ctatgttacattgactatctcaataaaaaatattgcaatgtatgaataagtgatatgactaatgtgtaaacattctttcactctttttgaaatgtcttcg |
42958245 |
T |
|
| Q |
260 |
tcctttgaaagacataaatgtattatcaaag |
290 |
Q |
| |
|
||||||| ||||| | |||| ||||||||| |
|
|
| T |
42958246 |
tcctttgcaagacttggatgtgttatcaaag |
42958276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 70 - 257
Target Start/End: Complemental strand, 46352562 - 46352376
Alignment:
| Q |
70 |
attgtatgcaggcgctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtca |
168 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| || |||||| ||| || || |||| |||| ||| | ||||||||| |||| |||||||||| | |
|
|
| T |
46352562 |
attgtatgcaggggctcttgccttttatttctcaaagatttctaaaacaagaatatcacttat---ccccaatttaattaacattcaacttgctatgtta |
46352466 |
T |
|
| Q |
169 |
cattgactttttcaatcaaaaatatcgcaaagtatgag-aagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtctt |
257 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
46352465 |
cattgactttttcaatcaaaaatatcacaaattatgaataagtgatatgactaatgtgtaaatattctttcactatttttgaaatgtctt |
46352376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 62 - 226
Target Start/End: Complemental strand, 18506794 - 18506628
Alignment:
| Q |
62 |
aaggggtcattgtatgcaggcgctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttg |
160 |
Q |
| |
|
||||||| ||||| |||| ||||||||||| ||||||||||| |||||||||| || ||||||| |||||||| | ||||||||||| ||||| |||| |
|
|
| T |
18506794 |
aaggggtggttgtaggcagttgctcttgccttttatttctccaagatttctcaaacaagaacatcacttatatgcaccagtttaattaacattccacttg |
18506695 |
T |
|
| Q |
161 |
ctatgtcacattgactttttcaatcaaaaatatcgcaaagtatg-agaagtgatatgactaatgtgt |
226 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
18506694 |
ctatgttacattgactttttcattaaaaaatatcgcaaagtatgaataagtgatatgactaatgtgt |
18506628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 62 - 272
Target Start/End: Original strand, 7486767 - 7486979
Alignment:
| Q |
62 |
aaggggtcattgtatgcaggcgctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatg-cccaagtttaattaaaattcccctt |
159 |
Q |
| |
|
||||||| ||||| | ||| ||||||||||| |||| |||||| |||||||||| || ||||||| ||||| |||||||| |||||| ||||| ||| |
|
|
| T |
7486767 |
aaggggtggttgtaggtaggggctcttgccttctattactccaaaatttctcaaacaagaacatcacatatatatcccaagtt-aattaacattccactt |
7486865 |
T |
|
| Q |
160 |
gctatgtcacattgactttttcaatcaaaaatatcgcaaagta-tgagaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttc |
258 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||| | | || |||| ||||||| |||||| ||| ||||| |||||||||||||||| | |
|
|
| T |
7486866 |
gctatgttacattgactttttcaatcaaaaatattgcaaagtatttataaatgatgcgactaatatgtaaacattgtttcactctttttgaaatgtctcc |
7486965 |
T |
|
| Q |
259 |
gtcctttgaaagac |
272 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
7486966 |
gtcctttgcaagac |
7486979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 15722783 - 15722893
Alignment:
| Q |
156 |
ccttgctatgtcacattgactttttcaatcaaaaatatcgcaaagtatgagaa-gtgatatgactaatgtgtaaatattctttcaatctttttgaaatgt |
254 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||| || ||||| || |||||||||||| ||||||||| ||||||| |||||| |
|
|
| T |
15722783 |
ccttgctatgttacattgactttttcaatcaaatatatcgcaaagtatgaaaaggtgatttgcctaatgtgtaaacattctttcactctttttaaaatgt |
15722882 |
T |
|
| Q |
255 |
cttcgtccttt |
265 |
Q |
| |
|
||||||||||| |
|
|
| T |
15722883 |
cttcgtccttt |
15722893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 19193323 - 19193375
Alignment:
| Q |
214 |
atgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttg |
266 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| |||||||||||||||||| |
|
|
| T |
19193323 |
atgactaatgtgtaaatattcttttactctttttaaaatgtcttcgtcctttg |
19193375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 19193455 - 19193498
Alignment:
| Q |
346 |
gtgacaaactcaaatggcttgataaataatatagagcatatgtg |
389 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19193455 |
gtgacagactcaaatggcttgagaaataatatagagcatatgtg |
19193498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 18505153 - 18505117
Alignment:
| Q |
353 |
actcaaatggcttgataaataatatagagcatatgtg |
389 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| |
|
|
| T |
18505153 |
actcaaatggctcgagaaataatatagagcatatgtg |
18505117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 130 - 290
Target Start/End: Original strand, 5162 - 5319
Alignment:
| Q |
130 |
atatgcccaagtttaattaaaattccccttgctatgtcacattgactttttcaatcaaaaatatcgcaaagtatgagaagtgatatgactaatgtgtaaa |
229 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
5162 |
atatgccccagtttaattaacattccacttgctatgtcacattgactttttcaattaa---tatcgaaaagtatgagaagttatatgactaatgtgtaaa |
5258 |
T |
|
| Q |
230 |
tattctttcaatctttttgaaatgtcttcgtcctttgaaagacataaatgtattatcaaag |
290 |
Q |
| |
|
|| ||||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5259 |
tagtctttcactcttgttgaaatgtattcgtcctttgaaagacataaatgtgttatcaaag |
5319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 381
Target Start/End: Original strand, 5375 - 5410
Alignment:
| Q |
346 |
gtgacaaactcaaatggcttgataaataatatagag |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
5375 |
gtgacaaactcaaatggcttgataaataatatagag |
5410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 62 - 289
Target Start/End: Original strand, 36332 - 36562
Alignment:
| Q |
62 |
aaggggtcattgtatgcaggcgctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttg |
160 |
Q |
| |
|
||||||| ||||| | ||| |||||||| || ||||||||||| |||||||||| || ||||||| |||||||||| ||||||||||| ||||| |||| |
|
|
| T |
36332 |
aaggggtggttgtaggtaggggctcttgcattctatttctccaagatttctcaaacaagaacatcacttatatgccccagtttaattaacattccacttg |
36431 |
T |
|
| Q |
161 |
ctatgtcacattgactttttcaatcaaaaatatcgcaaagtatg-agaagtgatatgactaatgtgtaaatattc-tttcaatctttttgaaatgtcttc |
258 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| |||||||||| | |||||| |||||||||||||||| |||| ||||| |||||||||||||||| | |
|
|
| T |
36432 |
ctatgttacattgactttttcaatgaaaaatattgcaaagtatgaataagtgacatgactaatgtgtaaacattcttttcactctttttgaaatgtctac |
36531 |
T |
|
| Q |
259 |
gtcctttgaaagacataaatgtattatcaaa |
289 |
Q |
| |
|
|||||||| ||||| | |||| |||||||| |
|
|
| T |
36532 |
gtcctttgcaagactttgatgtgttatcaaa |
36562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 71 - 290
Target Start/End: Original strand, 31694 - 31913
Alignment:
| Q |
71 |
ttgtatgcaggcgctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcac |
169 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||| || ||||||| || ||||||| |||||||||| || || |||| ||||| |||||||||| || |
|
|
| T |
31694 |
ttgtatgcaggggctcttgccttttatt-ctccaaaatatctcaaacaataacatcacttatatgccccagattggttaacattccacttgctatgttac |
31792 |
T |
|
| Q |
170 |
attgactttttcaatcaaaaatatcgcaaagtatgag-aagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaa |
268 |
Q |
| |
|
|| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| | |
|
|
| T |
31793 |
atcaactttttcaatcaaaa-tatctcaaagtatgaataagtgatatgactaatgtgtaaatattttttcactctttttgaaatgtcttcgtcctttgca |
31891 |
T |
|
| Q |
269 |
agacataaatgtattatcaaag |
290 |
Q |
| |
|
|||| | ||||| ||||||||| |
|
|
| T |
31892 |
agacttgaatgtgttatcaaag |
31913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 3569195 - 3569008
Alignment:
| Q |
71 |
ttgtatgcaggcgctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcac |
169 |
Q |
| |
|
||||||||||| |||||||| || |||||||| || |||||| ||| || ||||||| |||| ||| ||||||||||| |||| ||| |||||| || |
|
|
| T |
3569195 |
ttgtatgcaggggctcttgcgttttatttctcaaagatttctaaaacaagaacatcacttat---ccccagtttaattaacattcaacttactatgttac |
3569099 |
T |
|
| Q |
170 |
attgactttttcaatcaaaaatatcgcaaagtatg-agaagtgatatgactaa--tgtgtaaatattctttcaatctttttgaaatgtctt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | ||||||||||||||| |||||||||||||||||| | ||||||||||||||| |
|
|
| T |
3569098 |
attgactttttcaatcaaaaatatcgcaaattatgaataagtgatatgactaatgtgtgtaaatattctttcactatttttgaaatgtctt |
3569008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 1966870 - 1966765
Alignment:
| Q |
161 |
ctatgtcacattgactttttcaatcaaaaatatcgcaaagtatgagaag-tgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcg |
259 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||| ||| ||||||| |||||||||||| ||||||||| ||||||| ||||||||||| |
|
|
| T |
1966870 |
ctatgttacattgactttttcaatcaaatatatcgcaaagtatgaaaaggtgatatgcctaatgtgtaaacattctttcactctttttaaaatgtcttcg |
1966771 |
T |
|
| Q |
260 |
tccttt |
265 |
Q |
| |
|
|||||| |
|
|
| T |
1966770 |
tccttt |
1966765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 83 - 265
Target Start/End: Original strand, 39702523 - 39702707
Alignment:
| Q |
83 |
gctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatg-cccaagtttaattaaaattccccttgctatgtcacattgacttttt |
180 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||| || ||||||| ||||| |||||||| |||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
39702523 |
gctcttgccttctattactccaaaatttctcaaacaagaacatcacatatatatcccaagtt-aattaacattccacttgctatgttacattgacttttt |
39702621 |
T |
|
| Q |
181 |
caatcaaaaatatcgcaaagta-tgagaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtccttt |
265 |
Q |
| |
|
||||||||||||| |||||||| | | || |||| ||||||| |||||| ||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
39702622 |
caatcaaaaatattgcaaagtatttataaatgatgcgactaatatgtaaacattatttcactctttttgaaatgtctccgtccttt |
39702707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 75 - 290
Target Start/End: Complemental strand, 22407 - 22186
Alignment:
| Q |
75 |
atgcaggcgctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattg |
173 |
Q |
| |
|
||||||| ||||||||||| |||| |||||| |||||||||| || ||||||| |||||||||| || || |||| ||||| |||||||||| | || |
|
|
| T |
22407 |
atgcaggggctcttgccttttatt-ctccaaaatttctcaaacaataacatcacttatatgccccagattggttaacattccacttgctatgttatatca |
22309 |
T |
|
| Q |
174 |
actttttcaatcaaaaatatcgcaaagtatg-agaagtgatatgactaat----gtgtaaata-ttctttcaatctttttgaaatgtcttcgtcctttga |
267 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | |||||||||||||||| ||||||||| || ||| | |||||||||||||||||||||||||| |
|
|
| T |
22308 |
actttttcaatcaaaaatatctcaaagtatgaataagtgatatgactaattaaagtgtaaatattttttttactctttttgaaatgtcttcgtcctttgc |
22209 |
T |
|
| Q |
268 |
aagacataaatgtattatcaaag |
290 |
Q |
| |
|
||||| | |||| ||||||||| |
|
|
| T |
22208 |
aagacttggatgtgttatcaaag |
22186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 1581 - 1702
Alignment:
| Q |
83 |
gctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatg-cccaagtttaattaaaattccccttgctatgtcacattgacttttt |
180 |
Q |
| |
|
||||||||||| |||| |||||| |||| ||||| || ||||||| ||||| |||||||| |||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
1581 |
gctcttgccttctattactccaaaatttttcaaacaagaacatcacatatatatcccaagtt-aattaacattccacttgctatgttacattgacttttt |
1679 |
T |
|
| Q |
181 |
caatcaaaaatatcgcaaagtat |
203 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
1680 |
taatcaaaaatattgcaaagtat |
1702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 28775 - 28823
Alignment:
| Q |
224 |
tgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagac |
272 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||| ||||||||| ||||| |
|
|
| T |
28775 |
tgtaaacattgtttcactctttttgaaatgtctccgtcctttgcaagac |
28823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 28895 - 28931
Alignment:
| Q |
353 |
actcaaatggcttgataaataatatagagcatatgtg |
389 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| |
|
|
| T |
28895 |
actcaaatggctcgagaaataatatagagcatatgtg |
28931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 83 - 272
Target Start/End: Complemental strand, 6506651 - 6506462
Alignment:
| Q |
83 |
gctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatg-cccaagtttaattaaaattccccttgctatgtcacattgacttttt |
180 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| || ||||||| ||||| |||||||| |||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
6506651 |
gctcttgccttctatttctccaaaatttctcaaacaagaacatcacatatatatcccaagtt-aattaacattccacttgctatgttacattgacttttt |
6506553 |
T |
|
| Q |
181 |
caatcaaaaatatcgcaaagta-tgagaagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttgaaagac |
272 |
Q |
| |
|
|||| |||||||| |||||||| | | || ||||| ||||||| || |||||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
6506552 |
caataaaaaatattgcaaagtatttataaatgatacgactaatatgcaaatat--tttcactctttttgaaatgtcttcgtcctttgcaagac |
6506462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 257
Target Start/End: Complemental strand, 50350 - 50174
Alignment:
| Q |
83 |
gctcttgccttatatttctccaacatttctcaaa-aacaacatcaattatatgcccaagtttaattaaaattccccttgctatgtcacattgactttttc |
181 |
Q |
| |
|
||||||||||| |||||||| || |||||| ||| || || |||| |||| ||| ||||||||||| |||| |||||||||| |||||||||||||| |
|
|
| T |
50350 |
gctcttgccttttatttctcaaagatttctaaaacaagaatatcacttat---ccccagtttaattaacattcaacttgctatgttacattgactttttc |
50254 |
T |
|
| Q |
182 |
aatcaaaaatatcgcaaagtatgag-aagtgatatgactaat----gtgtaaatattctttcaatctttttgaaatgtctt |
257 |
Q |
| |
|
||| |||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
50253 |
aat-aaaaatatcgcaaattatgaataagtgatatgactaattaatgtgtaaatattctttcactatttttgaaatgtctt |
50174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0590
Description:
Target: scaffold0590; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 9604 - 9481
Alignment:
| Q |
168 |
acattgactttttcaatcaaaaatatcgcaaagtatgag-aagtgatatgactaatgtgtaaatattctttcaatctttttgaaatgtcttcgtcctttg |
266 |
Q |
| |
|
||||||| |||||| || || ||||| ||||||||||| |||||| ||||||||||| | || ||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
9604 |
acattgaatttttccatgaagaatattgcaaagtatgaataagtgacatgactaatgtcttaacattctttcactctttttgaaatgccttcgtcctttg |
9505 |
T |
|
| Q |
267 |
aaagacataaatgtattatcaaag |
290 |
Q |
| |
|
||||| || |||| ||||||||| |
|
|
| T |
9504 |
caagacttagatgtgttatcaaag |
9481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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