View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7422_low_2 (Length: 469)
Name: NF7422_low_2
Description: NF7422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7422_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 7565860 - 7566290
Alignment:
| Q |
15 |
gatatccagaagatgagaaagacagtgttttccagccatgaatctaacaccagcagcttcaccagtagtggcgagatgggccaaactccaccaaagctga |
114 |
Q |
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| T |
7565860 |
gatatgcagaagatgagaaagacagtgttttccagccatgaatctaacaccagcagcttcaccagtagtggcgagatgggccaaactccaccaaagctga |
7565959 |
T |
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| Q |
115 |
agactccacaacaattgccttaagctgttaatcatacatgtggaaaggattagagggacaaaaattcaa-ggggttgcttttgtttgatgtatatcgttt |
213 |
Q |
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| T |
7565960 |
agactccacaacaattgccttaagctgttaatcatacatgtggaaaggattagagggacaaaaattcaaaggggttgcttttgtttgatgtatattgttt |
7566059 |
T |
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| Q |
214 |
ccttgtgatgggaagtaatatatcattctgtggagaatttgagtttgaggctctgtttcggggtgtatttgaggtgtaagtttatgccaacgtgacatat |
313 |
Q |
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| T |
7566060 |
ccttgtgatgggaagtaatatatcattctgtggagaatttgagtttgaggctctgtt-cggggtgtatttgaggtgtaagtttatgccaacgtgacatat |
7566158 |
T |
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| Q |
314 |
ttcattaatttgttcactggttattatgtaatgtaataatgattatacataggcataccttggaatggagtgcatagacatgattaactactctgtatta |
413 |
Q |
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| T |
7566159 |
ttctttaatttgttcactggttattatgtaatgtaataatgattatacataggcataccttggaatggagtgcatagacatgattaactactctgtatta |
7566258 |
T |
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| Q |
414 |
ttgaatcaagtttctttctatacgtattttgt |
445 |
Q |
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| T |
7566259 |
ttgaatcaagtttctttctatacgtattttgt |
7566290 |
T |
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