View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7423_low_1 (Length: 301)
Name: NF7423_low_1
Description: NF7423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7423_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 31479041 - 31479318
Alignment:
| Q |
7 |
agcagaacctgtgcgtaatcagcaagggcttgtgctgagtttaaatagccgtaagatgcgttaaagctgggcactgacttcccgtagtaccggtgctaac |
106 |
Q |
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| T |
31479041 |
agcagaacttctgcgtaatcagcaagggcttgtgctgagtttaaatagccgtaagatgcgttaaagctgggcactgacttcccgtagtaccggtgctaac |
31479140 |
T |
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| Q |
107 |
aagaaaattaaaagtggtatcagaatcgtaaaactaatttgatttagatcaatgagtgtcaaaagaaatagtcttctatttagtacctcaatgtatacta |
206 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31479141 |
aagaaaattaaaagttgtatcagaatcgtaaaactaatttgattttgatcaatgagtgtcaaaagaaatagttttctatttagtacctcaatgtatacta |
31479240 |
T |
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| Q |
207 |
gtagagctttaaaagaagtggcattatccatcataaaaccaagcgtattaacaatgtcatcttctccacccaaataag |
284 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31479241 |
gtagagctttaaaagaagtggcattatccgtcataaaaccaagtgtattaacaatgtcatcttctccacccaaataag |
31479318 |
T |
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