View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7424_high_11 (Length: 252)
Name: NF7424_high_11
Description: NF7424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7424_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 69 - 237
Target Start/End: Complemental strand, 4751080 - 4750912
Alignment:
| Q |
69 |
ccctatgacttggccttannnnnnnnaatcaagaagaaaggacaaaacaaagcaaaaactacgatcttaggcgaagaactccaagagcattgacaagaat |
168 |
Q |
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| T |
4751080 |
ccctatgacttggccttattttttttaatcaagaagaaaggacaaaataaagtaaaaactacgatcttaggcgaagaactccaagagcattgacaagaat |
4750981 |
T |
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| Q |
169 |
agagacagaacaatcccatgatttatgttacttttataattcttgcaagacaattatctgtaggccttg |
237 |
Q |
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| T |
4750980 |
agagagagaacaatcccatgatttatgttacttttataattcttgcaagacaattatctgtaggccttg |
4750912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 69 - 237
Target Start/End: Complemental strand, 4741816 - 4741647
Alignment:
| Q |
69 |
ccctatgacttggccttannnnnnnnaatcaagaagaaaggacaaaacaaagcaaaaactacgatcttaggcgaagaactccaagagcattgacaagaat |
168 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4741816 |
ccctatgacttggccttattttttttaatcaagaagaaaggacaaaataaagcaaaaactacgattttaggcgaagaactccaagagcattgacaagaat |
4741717 |
T |
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| Q |
169 |
agagacagaacaatcccatgatttatgttacttttataattcttgcaagac-aattatctgtaggccttg |
237 |
Q |
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| T |
4741716 |
agagacagaacaatcccatgatttatgttacttttataattcttgcaagacaaattatctgtaggccttg |
4741647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 4759337 - 4759280
Alignment:
| Q |
180 |
aatcccatgatttatgttacttttataattcttgcaagacaattatctgtaggccttg |
237 |
Q |
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| T |
4759337 |
aatcccatgatttatgttacttttataattcttgcaaggcaattatctttaggccttg |
4759280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 13583687 - 13583616
Alignment:
| Q |
96 |
atcaagaagaaaggacaaaacaaagcaaaaactacgatcttaggcgaagaactccaagagcattgacaagaa |
167 |
Q |
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||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||| ||| || ||||| |
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| T |
13583687 |
atcaagaagaaaggacaaaacaaagtaaaaactacaatattaggcgatcaactccaagaacatcgaaaagaa |
13583616 |
T |
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