View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7424_high_12 (Length: 250)
Name: NF7424_high_12
Description: NF7424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7424_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 34579809 - 34579586
Alignment:
| Q |
16 |
atgtatgcactcattttatagttattatgcactannnnnnncattgtaatttataataatttgatatttttaaaaatattcattgaaacaaatcgaactt |
115 |
Q |
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| T |
34579809 |
atgtatgcactcattttatagttattatgcactatttttttcattgtaatttataataatttgatatttttaaaaatattcattgaaacaaaccgaactt |
34579710 |
T |
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| Q |
116 |
tttacgcgacatagtattttaaaacggtagaagtataaaatataggcgttatttcacttcannnnnnnnaataggtataaatatgtcattgtttcctgca |
215 |
Q |
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| T |
34579709 |
tttacgcgacatagtattttaaaacggtaaaagtataaaatataggcgtcatttcactacattttttttaataggtataaatatgtcattgtttcctgca |
34579610 |
T |
|
| Q |
216 |
ctttaactatactttgacattggtc |
240 |
Q |
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|||||||||| |||||||||||||| |
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| T |
34579609 |
ctttaactat-ctttgacattggtc |
34579586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 7268708 - 7268655
Alignment:
| Q |
66 |
ttataataatttgatatttttaaaaatattcattgaaacaaatcgaacttttta |
119 |
Q |
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|||||| || |||||||||| ||||||||||||||| ||||||||||| ||||| |
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| T |
7268708 |
ttataaaaagttgatattttaaaaaatattcattgagacaaatcgaacatttta |
7268655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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