View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7424_high_14 (Length: 237)

Name: NF7424_high_14

Description: NF7424

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7424_high_14

[»] chr5 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 136; E-Value: 4e-71

Query Start/End: Original strand, 18 - 224

Target Start/End: Original strand, 41181142 - 41181349

Alignment:

Q	18	gaaatcatatttgtggatagatcattagaaggagaagttattctcgttaacagg-taaggatagaaatcatctnnnnnnnnnnnnnnnnnnnngtaataa	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	41181142	gaaatcatatttgtggatagatcattagaaggagaagttattctcgttaacagggtaaggatagaaatcatctttatttattattattattatgtaataa	41181241	T

Q	117	acaaatgaagttcactaaaattaataattctcacaataaccaccaggtcctccaaattgaagagaatacccaacatttccactttgatcaccataatatt	216	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41181242	acaaatgatgttcactaaaattaataattctcacaataaccaccaggtcctccaaattgaagagaatacccaacatttccactttgatcaccataatatt	41181341	T

Q	217	caacacca	224	Q
		\|\|\|\|\|\|\|\|
T	41181342	caacacca	41181349	T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 155 - 220

Target Start/End: Complemental strand, 50200394 - 50200329

Alignment:

Q	155	accaccaggtcctccaaattgaagagaatacccaacatttccactttgatcaccataatattcaac	220	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|
T	50200394	accaccaggtcctccgaattgcatagaatacccaacttgtcctctttgatctccatagaattcaac	50200329	T

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