View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7424_high_6 (Length: 316)
Name: NF7424_high_6
Description: NF7424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7424_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 3087620 - 3087317
Alignment:
| Q |
1 |
atttgaccataaatagttatgtttcgcttttgattttagaattgattttaggttagtgatacgtgtgtaaacctttcaatctagtcatatctatctaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
3087620 |
atttgaccataaatagttatgtttcgcttttgattttagaattgattttaggttagtgatacgtgtctaaacctttcaatctagccatatctatctaatg |
3087521 |
T |
|
| Q |
101 |
tttatggcataaccagacacactatgtttgttagctgagggctagggtttgaactttacctgtgcaattagacatgtcatctcatgaccctctttgctcc |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3087520 |
tttatcgcataaccagacacactatgtttgttagctgagggctagggtttgaactttacctgtgcaattagacatgtcatctcatgaccctctttgctcc |
3087421 |
T |
|
| Q |
201 |
atccaatgacaccaggtactatgctgaaagtagaacacaagaacaacacaaatccaaatggaagagacaacatcaaacctttcaatctcgccatatctaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3087420 |
atccaatgacaccaggtactatgctgaaagtagaacacaaaaacaacacaaatccaaatggaagagacaacatcaaacctttcaatctcgccatatctaa |
3087321 |
T |
|
| Q |
301 |
tatt |
304 |
Q |
| |
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|||| |
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| T |
3087320 |
tatt |
3087317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3087685 - 3087621
Alignment:
| Q |
1 |
atttgaccataaatagttatgtttcgcttttgattttagaattgattttaggttagtgatacgtg |
65 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3087685 |
atttgactataaatagttatgtttcgctttggattttagaattgattttaggttagtgatacgtg |
3087621 |
T |
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