View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7424_high_9 (Length: 259)
Name: NF7424_high_9
Description: NF7424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7424_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 34578437 - 34578295
Alignment:
| Q |
1 |
ttgatcagaagcaactcatctgcaattgattctttcctctcattctttgctaatctgcctgagtagttgtccagtgaagaacctacaactgttcccacct |
100 |
Q |
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| T |
34578437 |
ttgatcagaagcaactcatctgcaattgattctttcctctcattctttgctaatctgtctgagtagttgtccagtggagaacctacaactgttcccacct |
34578338 |
T |
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| Q |
101 |
gatcatattcaaatcacaacaaaatggttaaaggatgttgaac |
143 |
Q |
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| T |
34578337 |
gctcatattcaaatcacaacaaaaaggttaaaggatgttgaac |
34578295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 34578256 - 34578173
Alignment:
| Q |
159 |
ctcaactgtgagcatcgatcaatatatacatgtcaaagtgtaaagatcataagaaattgtgtacacaataaaattagttagttt |
242 |
Q |
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| T |
34578256 |
ctcaactgtgagcatcgatcaatatatacatgtcaaagtgtaaagatcataagaaattgtgtacacaatacaattagttagttt |
34578173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 27690385 - 27690437
Alignment:
| Q |
90 |
tgttcccacctgatcatattcaaatcacaacaaaatggttaaaggatgttgaac |
143 |
Q |
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| T |
27690385 |
tgttcccacctgatcatattcaaatcacaacaaaaagg-taaaagatgttgaac |
27690437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27690341 - 27690379
Alignment:
| Q |
1 |
ttgatcagaa-gcaactcatctgcaattgattctttcct |
38 |
Q |
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| T |
27690341 |
ttgatcagaaagcaactcatctgcaattgattctttcct |
27690379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 35085346 - 35085223
Alignment:
| Q |
9 |
aagcaactcatctgcaattgattctttcctctcattctttgctaatctgcctgagtagttgtccagtgaagaacctacaactgttcccacctgatcatat |
108 |
Q |
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||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| | |||||||| ||||||||| | ||||||||||||||||||| |
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| T |
35085346 |
aagcaactcgtctgcaattgattctttcctctcacggtttgttaatctgcctgagtaatagtccagtggagaacctaccattgttcccacctgatcatat |
35085247 |
T |
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| Q |
109 |
tcaaatcacaacaaaatggttaaa |
132 |
Q |
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|||||||||||||||| ||||||| |
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| T |
35085246 |
tcaaatcacaacaaaaaggttaaa |
35085223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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