View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7424_low_2 (Length: 572)
Name: NF7424_low_2
Description: NF7424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7424_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 13 - 556
Target Start/End: Original strand, 9729194 - 9729737
Alignment:
| Q |
13 |
aatatggcacatgcatgacacatgttacatgtcataatatgtaacatgttactattgaaagttatgtgtacaaaggttgatgttacttacggccatggat |
112 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9729194 |
aatatggcacatgcatgacacatgtgacatgtcataatatgtaacatgttactattgaaagttatgtgtacaaaggttgatgttacttacggccatggat |
9729293 |
T |
|
| Q |
113 |
catcaccgacaagcatcatgtcattttcattatcagtgaaagtaactctccatttgttttgtgaacgtaactctcctttaatatcaaataatttttcaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9729294 |
catcaccgacaagcatcatgtcattttcattatcagtgaaagtaactctccatttgttttgtgaacgtaactctcctttaatatcaaataatttttcaac |
9729393 |
T |
|
| Q |
213 |
ttcatctatgagttcatcataaccacttaacatggttaagtcaagtgcacgaccaacagctacaccttccatttgcaccttctcaaaaacaacaaaaata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9729394 |
ttcatctatgagttcatcataaccacttaacatggttaagtcaagtgcacgaccaacagctacaccttccatttgcaccttctcaaaaacaacaaaaata |
9729493 |
T |
|
| Q |
313 |
tttgaaactctttgaaaataaattactaatatgatcaaagtttttcaaattcaaggaccattttgaaatattaataattttatggactaaattgttaata |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9729494 |
tttgaaactctttgaaaataaattactaatatgatcaaagtttttcaaattcaaggaccattttgaaatattaataattttatggactaaattgttaatc |
9729593 |
T |
|
| Q |
413 |
tattattttcaaggtttaatgtattgtaggccatgcaaatatacaannnnnnnnnaggactaaggtactaaaatcaaatactcaacatattatagggcta |
512 |
Q |
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| T |
9729594 |
tattattttcaaggtttaatgtattgtaggccatgcaaatatacaatttttttttaggactaaggtactaaaatcaaatactcaacatattatagggcta |
9729693 |
T |
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| Q |
513 |
atttcaacatagactaatttcaaagggactaaaacaatattttt |
556 |
Q |
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| T |
9729694 |
atttcaacatagactaatttcaaagggactaaaacaatattttt |
9729737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 22760832 - 22760776
Alignment:
| Q |
96 |
tacttacggccatggatcatcaccgacaagcatcatgtcattttcattatcagtgaa |
152 |
Q |
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|||| ||||||||||||||||||| ||||||||||| || ||||| ||||||||| |
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| T |
22760832 |
tactcacggccatggatcatcaccaacaagcatcatatctccttcatcatcagtgaa |
22760776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 7074140 - 7074196
Alignment:
| Q |
96 |
tacttacggccatggatcatcaccgacaagcatcatgtcattttcattatcagtgaa |
152 |
Q |
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|||| |||||||||||||||| |||||||||||||| || ||||| ||||||||| |
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| T |
7074140 |
tactcacggccatggatcatctccgacaagcatcatatctccttcatcatcagtgaa |
7074196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 10143387 - 10143419
Alignment:
| Q |
374 |
tttgaaatattaataattttatggactaaattg |
406 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
10143387 |
tttgaaatattaataattttatgaactaaattg |
10143419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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