View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7424_low_4 (Length: 533)

Name: NF7424_low_4
Description: NF7424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7424_low_4
NF7424_low_4
[»] chr2 (5 HSPs)
chr2 (1-523)||(22624829-22625352)
chr2 (79-181)||(10599831-10599939)
chr2 (353-440)||(32285879-32285965)
chr2 (2-42)||(29280190-29280230)
chr2 (439-515)||(32285984-32286060)
[»] chr6 (2 HSPs)
chr6 (1-193)||(21762126-21762319)
chr6 (81-191)||(826565-826676)
[»] chr7 (1 HSPs)
chr7 (16-184)||(6253907-6254081)
[»] chr3 (6 HSPs)
chr3 (99-196)||(2555187-2555285)
chr3 (144-193)||(42655980-42656029)
chr3 (385-440)||(46674022-46674077)
chr3 (1-51)||(42655877-42655927)
chr3 (1-51)||(52041300-52041350)
chr3 (1-37)||(1141848-1141884)
[»] chr4 (2 HSPs)
chr4 (144-195)||(24257931-24257982)
chr4 (2-42)||(9451347-9451387)


Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 22625352 - 22624829
Alignment:
Q  1 ctactcagcaagttgagttcaatttttaaatttccctcccacgacatttgcattgtgcctatgcatgtacctcaaacagctgaatgattgcatttaatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22625352 ctactcagcaagttgagttcaatttttaaatttccctcccacgacctttgcattgtgcctatgcatgtacctcaaacagctgaatgattgcatttaatat 22625253  T
Q  101 acactaacctcatttctatgtttccaacatgattgttattgtttcatgcacattttattctactatctttcccatgcccatgtatacatgtgttatggta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22625252 acactaacctcatttctatgtttccaacatgattgttattgtttcatgcacattttattctactatctttcccatgcccatgtatacatgtgttatggta 22625153  T
Q  201 acaatttctttcccgtccgaatttcttttttagaagttacattggagccccattgattgtgcattggtagcatgtgaatcctatcagaatcagtcaacct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22625152 acaatttctttcccgtccgaatttcttttttagaagttacattggacccccattgattgtgcattggtagcatgtgaatcctatcagaatcagtcaacct 22625053  T
Q  301 ttaccacatgaaaggaaggttaagagatgccagttaaatgcatcagtttctattggatgcatctcatctgattaggtgtagtccttttacctctgatata 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22625052 ttaccacatgaaaggaaggttaagagatgccagttaaatgcatcagtttctattggatgcatctcatctgattaggtgtagtccttttacctctgatata 22624953  T
Q  401 gcctgtcatcgagttggagttcctcagtctgagtagtg-tgagatatgcatattgttccaggattttggtcgctgtattttgagtgaaaagttgatgtaa 499  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22624952 gcctgtcgtcgagttggagttcctcagtctgagtagtgttgagatatgcatattgttccaggattttggtcgctgtattttgagtgaaaagttgatgtaa 22624853  T
Q  500 caattaatagagatgtccatctca 523  Q
    |||||||||||||||| |||||||    
T  22624852 caattaatagagatgtgcatctca 22624829  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 10599939 - 10599831
Alignment:
Q  79 gctgaatgattgcatttaatatacactaacctcatttctatgtttccaacatgatt-gttattgttt--catgcacat---tttattctactatctttcc 172  Q
    ||||||||||  ||||||||||||  | |||||||||||||||||||||| ||||| |||| ||||   |||||||||   |||||||| || |||||||    
T  10599939 gctgaatgatgacatttaatataccttgacctcatttctatgtttccaacgtgatttgttagtgttctccatgcacatatatttattcttctctctttcc 10599840  T
Q  173 catgcccat 181  Q
    |||||||||    
T  10599839 catgcccat 10599831  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 440
Target Start/End: Original strand, 32285879 - 32285965
Alignment:
Q  353 ttggatgcatctcatctgattaggtgtagtccttttacctctgatatagcctgtcatcgagttggagttcctcagtctgagtagtgtg 440  Q
    ||||||||||||||| |||||| |||  ||| |||| ||| |||  ||||||||||| |||||| ||| ||||||||||||| |||||    
T  32285879 ttggatgcatctcatttgattatgtgcggtctttttgcct-tgagttagcctgtcattgagttgaagtacctcagtctgagtggtgtg 32285965  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 29280190 - 29280230
Alignment:
Q  2 tactcagcaagttgagttcaatttttaaatttccctcccac 42  Q
    |||||| |||| | |||||||||||||||||||||||||||    
T  29280190 tactcatcaagctaagttcaatttttaaatttccctcccac 29280230  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 515
Target Start/End: Original strand, 32285984 - 32286060
Alignment:
Q  439 tgagatatgcatattgttccaggattttggtcgctgtattttgagtgaaaagttgatgtaacaattaatagagatgt 515  Q
    ||||||||||||||||||   |||||||||  |||||||||||||||   |||||||||| | || | |||||||||    
T  32285984 tgagatatgcatattgttttcggattttggctgctgtattttgagtggggagttgatgtatccatcagtagagatgt 32286060  T

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Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 21762126 - 21762319
Alignment:
Q  1 ctactcagcaagttgagttcaatttttaaatttccctcccacgacatttgcattgtgcctatgcatgtacctcaaacagctgaatgattgcatttaatat 100  Q
    ||||||| |||| | ||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |||| |   |  ||||||||  ||||||||||    
T  21762126 ctactcatcaagctaagttcaatttttaaatttccctcccacaacatttgcattctgccgatgcatgcacctaaggaatgtgaatgatgacatttaatat 21762225  T
Q  101 acactaacctcatttctatgtttccaacatgattgttattgtt-tcatgcacattttattctactatctttcccatgcccatgtatacatgtgt 193  Q
    || ||| |||||||||||| |||||||| ||| |||||||||| | |||||||| |||||||||| |||||||||||||||| |||||||||||    
T  21762226 accctatcctcatttctatatttccaacgtgactgttattgttctgatgcacatattattctactctctttcccatgcccatatatacatgtgt 21762319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 826676 - 826565
Alignment:
Q  81 tgaatgattgcatttaatatacactaacctcatttctatgtttccaacatgattgttattgtt-tcatgcacattttattctactatctttcccatgccc 179  Q
    ||||||||  |||||||||||| ||| |||||||||||| |||||||| ||| |||||||||| | |||||||| |||||||||| ||||||||||||||    
T  826676 tgaatgatgacatttaatataccctatcctcatttctatatttccaacgtgactgttattgttctgatgcacatattattctactctctttcccatgccc 826577  T
Q  180 atgtatacatgt 191  Q
    || |||||||||    
T  826576 atatatacatgt 826565  T

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Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 6253907 - 6254081
Alignment:
Q  16 agttcaattttta--aatttccctcccacgacatttgcattgtg--cctatgcatgtacctcaaacagctgaatgattgcatttaatatacactaacctc 111  Q
    |||||||||||||  |||||||| ||||| || |||||||| ||  || ||||||||| |||||   ||||||||||  |||||||| |||  | |||||    
T  6253907 agttcaatttttagtaatttcccacccacaacctttgcattctgaaccaatgcatgtatctcaagaggctgaatgatgacatttaatctaccttgacctc 6254006  T
Q  112 atttctatgtttccaacatgattgttattgttt--catgcacattttattctactatctttcccatgcccatgta 184  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||||||| ||||| |||||||||||||    
T  6254007 atttctatgtttccaacatgattgttattgttttccatgcacatattattctactctctttaccatgcccatgta 6254081  T

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Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 2555187 - 2555285
Alignment:
Q  99 atacactaacctcatttctatgtttccaacatgattgttattgtt-tcatgcacattttattctactatctttcccatgcccatgtatacatgtgttat 196  Q
    |||| ||| |||||||||||||||||||| |||||||||||| || |||||||||| |||||||||| |||||||||||| ||||||||||||||||||    
T  2555187 ataccctatcctcatttctatgtttccaatatgattgttattcttctcatgcacatattattctactctctttcccatgctcatgtatacatgtgttat 2555285  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 42655980 - 42656029
Alignment:
Q  144 tcatgcacattttattctactatctttcccatgcccatgtatacatgtgt 193  Q
    ||||| |||| |||||||||| |||||||||||||||| |||||||||||    
T  42655980 tcatgtacatattattctactctctttcccatgcccatatatacatgtgt 42656029  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 440
Target Start/End: Complemental strand, 46674077 - 46674022
Alignment:
Q  385 ttttacctctgatatagcctgtcatcgagttggagttcctcagtctgagtagtgtg 440  Q
    |||| ||| |||| ||||||||| ||||||||||||| ||| ||||||||||||||    
T  46674077 ttttgcctttgatttagcctgtcttcgagttggagttgctctgtctgagtagtgtg 46674022  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42655877 - 42655927
Alignment:
Q  1 ctactcagcaagttgagttcaatttttaaatttccctcccacgacatttgc 51  Q
    ||||||| |||| | ||||||||||||||||||||||||||  ||||||||    
T  42655877 ctactcatcaagctaagttcaatttttaaatttccctcccataacatttgc 42655927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 52041350 - 52041300
Alignment:
Q  1 ctactcagcaagttgagttcaatttttaaatttccctcccacgacatttgc 51  Q
    ||||||| |||| | |||||||||||||||||||||||| || ||||||||    
T  52041350 ctactcatcaagctaagttcaatttttaaatttccctcctacaacatttgc 52041300  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1141848 - 1141884
Alignment:
Q  1 ctactcagcaagttgagttcaatttttaaatttccct 37  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  1141848 ctactcaacaagctgagttcaatttttaaatttccct 1141884  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 24257931 - 24257982
Alignment:
Q  144 tcatgcacattttattctactatctttcccatgcccatgtatacatgtgtta 195  Q
    ||||||| ||||||||||||| ||||||||||||||||  ||||||| ||||    
T  24257931 tcatgcagattttattctactctctttcccatgcccatacatacatgcgtta 24257982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 9451347 - 9451387
Alignment:
Q  2 tactcagcaagttgagttcaatttttaaatttccctcccac 42  Q
    |||||| |||| | |||||||||||||||||||||||||||    
T  9451347 tactcatcaagctaagttcaatttttaaatttccctcccac 9451387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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