View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7424_low_6 (Length: 422)
Name: NF7424_low_6
Description: NF7424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7424_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 300
Target Start/End: Original strand, 2762035 - 2762318
Alignment:
| Q |
14 |
ttggtgttccaattgatgcacctacgatctactcacacaatataggtggtaacccagagttctattcctgcgtgcgtgcaagacttaaacatatgctatc |
113 |
Q |
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| T |
2762035 |
ttggtgttccaattgatgcacctacgatctactcacacaatataggtggtaacccagagttctattcctgcgtgcgtgcaagacttaaacatatactatc |
2762134 |
T |
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| Q |
114 |
atttcgtacgtgaattagtatcagcgaagaatctcagtatttctcgcatgccaacaagtccctaaccagctagcctccacattaaaccactttcttcccc |
213 |
Q |
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| T |
2762135 |
atttcgtacgtgaattagtatcagcgaagaatctcagtatttctcgcatgccaacaagtccctaaccagctagcctccacattaaaccactttcttcccc |
2762234 |
T |
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| Q |
214 |
gcatcataacttgcgcaaaccaaagattcgagtaattggatctgcctccatattgcaggagcatgatgtagctgacctgacttactt |
300 |
Q |
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| T |
2762235 |
gcatcataacatgcgcaaaccaaagattcgagtaattggatctgcctccatattgcaggagc---atgtagctgaccttacttactt |
2762318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 2822226 - 2822263
Alignment:
| Q |
16 |
ggtgttccaattgatgcacctacgatctactcacacaa |
53 |
Q |
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| T |
2822226 |
ggtgttccaattgatgcacctacaatctactaacacaa |
2822263 |
T |
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