View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7424_low_7 (Length: 342)
Name: NF7424_low_7
Description: NF7424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7424_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 5401188 - 5400882
Alignment:
| Q |
20 |
ctaataattttggaatgcaggtgttagtactcaacaacctcatgtcctttgtggaaccaaatttgacacgaggagctggtttcttaagctgttcttagaa |
119 |
Q |
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| T |
5401188 |
ctaataattttggcatgcaggtgttagtactcaacaacctcatgtcctttgtggaaccaaatttgacacgaggagctggtttcttaagctgttcttagaa |
5401089 |
T |
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| Q |
120 |
ttgaataaggacactacttgtacagttatgcacacacgatcacaaacatcttttacggtgaaaaaagcttaacttctcctcgattaggataactcaaaac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5401088 |
ttgaataaggacactacttgtacagttatgcacacacgatcacaaacatcttttacggtgaaaaaagcttaacttctcctcgattaggataactcaaaac |
5400989 |
T |
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| Q |
220 |
ccagattccccagcttaaagaaaacaactagaaccccactatatatagtaactttttggtttttgttaaaaaatgcactatcttactagaatcaatgcta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5400988 |
ccagattccccagcttaaagaaaacaactagaaccccactatatatagtaactttttggtttttgttaaaaaatgcactatcttactagaatcaatgcta |
5400889 |
T |
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| Q |
320 |
ggttcat |
326 |
Q |
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||||||| |
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| T |
5400888 |
ggttcat |
5400882 |
T |
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