View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7425_high_2 (Length: 563)
Name: NF7425_high_2
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7425_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 24308894 - 24309357
Alignment:
| Q |
1 |
atgagttctgattgaggattatagtaaaggacggaatgatttaactgaaaactcactatatactaagtgaaactttataagcctgaagtatttgattcct |
100 |
Q |
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| T |
24308894 |
atgagttctgattgaggattatagtaaaggacggaatgatttaactgaaaactcactatatactaagtgaaactttataagcctgaagtatttgattcct |
24308993 |
T |
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| Q |
101 |
tcaatttgagtttgttgctcattctgactctcattttgaataaatttttgctatcttaaataacttcaatgatctgatgtgttaattttctttgaattat |
200 |
Q |
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| T |
24308994 |
tcaatttgagtttgttgctcattctgactctcattttgaataaatttttgttatcttgaataacttcaatgatcttatgtgttaattttctttgaattat |
24309093 |
T |
|
| Q |
201 |
ggtcacataaatttaaatttaaacaaacaaggtttgggatgtatgaacaagtttatttttatgctaatggtaatatttgtttgtttgaaattttttagtt |
300 |
Q |
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| T |
24309094 |
gg-----taaatttaaatttaaacaaacaaggtttgggatgtatgaacaaatttatttttatgctaatggtaatatttg-ttgtttgaaattttttagtt |
24309187 |
T |
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| Q |
301 |
gatgaatgcataaagataaaatcatcaatgaatgtat---gatgatgacaagttgatgattgcaaaggcgagggtacatgtttatggccacatctataat |
397 |
Q |
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|||||||||||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
24309188 |
gatgaatgcatatagataaaatcatcaactaaatcatcaatatgatgacaagttgatgattgcaaaggcgagggtacatgtttatggccacatatatcat |
24309287 |
T |
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| Q |
398 |
acatagctagtgagtagtgagtatttgataactccctttgatt-nnnnnnntgtaaaatttgcaatgtttcttt |
470 |
Q |
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||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24309288 |
aca----tagtgagtagtgagtatttgataactccctttgattaaaaaaaatgtaaaatttgcaatgtttcttt |
24309357 |
T |
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