View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7425_high_3 (Length: 511)
Name: NF7425_high_3
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7425_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 16 - 505
Target Start/End: Complemental strand, 3703145 - 3702651
Alignment:
| Q |
16 |
agtattattaagaagtgtgcttttaaaatactgatgtaacttaactatatcaactgatcttcagataaattgtaaactatgaatgatacaaaataataca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3703145 |
agtattattaagaagtgtgcttttaaaatactgatgtaacttaactatatcaactgatcttcagataaattgtaaactatgaatgatacaaaataataca |
3703046 |
T |
|
| Q |
116 |
tgaaacaaaagaatgttgcaatttt-attaattgatctcttatttggctatgaaagtgtatataattgagttacaactctgaatctaaccatacatctta |
214 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3703045 |
tgaaagaaaagaatgttgcaatttttattaattgatctcttatttggctatgaaagtgtatataattgagttacaactctgaatctaaccatacatctta |
3702946 |
T |
|
| Q |
215 |
tcttatacaaagccacttcaacattatgtaaataaa----caaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatcaaaatacaa |
310 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702945 |
tcttatacaaagccacatcaacattatgtaaataaataaacaaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatcaaaatacaa |
3702846 |
T |
|
| Q |
311 |
caaataacacaaagttcttaatcttataagtttaaagnnnnnnngtgcctgctaaaccatgacgcaaaagattatgagcaatagcatctctagccttcaa |
410 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3702845 |
caaataacacaaagttcttaatcttataagtttaaagaaaagaagtgcctgctaaaccatgatgcaaaagattatgagcaatagcatctctagccttcaa |
3702746 |
T |
|
| Q |
411 |
tgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctcgcctttcatctcac |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3702745 |
tgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctcacctttcatctcac |
3702651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 233 - 505
Target Start/End: Complemental strand, 3699231 - 3698963
Alignment:
| Q |
233 |
caacattatgtaaataaacaaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatcaaaatacaacaaataacacaaagttcttaat |
332 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
3699231 |
caacattatgtaaataaaca----gcaaaaaagaaaatcatgttctcagagatgcataaaacaatgatcaaaatacaacaaattacacaaagttcttaat |
3699136 |
T |
|
| Q |
333 |
cttataagtttaaagnnnnnnngtgcctgctaaaccatgacgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaacta |
432 |
Q |
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| T |
3699135 |
cttatgagtttaaagaaaagaagtgcctgctaaaccatgatgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaacta |
3699036 |
T |
|
| Q |
433 |
acttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctcgcctttcatctcac |
505 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3699035 |
acttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctcacctttcatctcac |
3698963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 3699475 - 3699346
Alignment:
| Q |
37 |
tttaaaatactgatgtaacttaactatatcaactgatcttcagataaattgtaaactatgaatgatacaaaataatacatgaaacaaaagaatgttgcaa |
136 |
Q |
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||||||| | |||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
3699475 |
tttaaaacaatgatgtaactgaactatatcaattgatcttctaataaattgtaaactaggaatgatacaaaataatccatgaaacaaaagaatgttgcaa |
3699376 |
T |
|
| Q |
137 |
ttttattaattgatctcttatttggctatg |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
3699375 |
ttttattaattgatctcttatttggctatg |
3699346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 3699283 - 3699251
Alignment:
| Q |
205 |
atacatcttatcttatacaaagccacttcaaca |
237 |
Q |
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||||||||||||||||||||||||||||||||| |
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|
| T |
3699283 |
atacatcttatcttatacaaagccacttcaaca |
3699251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 491
Target Start/End: Complemental strand, 39718924 - 39718869
Alignment:
| Q |
436 |
tcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctc |
491 |
Q |
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||||||| |||||||||||| | || ||||| | |||||||||||||||||||||| |
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|
| T |
39718924 |
tcaggaagcatttcatcatccaaaacatcaatcttaagttcaggatccattttctc |
39718869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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