View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7425_high_6 (Length: 442)
Name: NF7425_high_6
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7425_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 41311279 - 41311027
Alignment:
| Q |
8 |
atggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311279 |
atggtggtcccagagttgggtcgttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttgatttaaa |
41311180 |
T |
|
| Q |
108 |
ggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311179 |
ggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgta |
41311080 |
T |
|
| Q |
208 |
tggaatatggagatgcctacacttaagatatgggtgatgcaagaatacacaat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41311079 |
tggaatatggagatgcctacacttaagatatgggtgatgcaagaatacgcaat |
41311027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 258 - 424
Target Start/End: Complemental strand, 41310953 - 41310787
Alignment:
| Q |
258 |
aattgtggcgatattgttggaccagctaatggtggattagttaagcttaatgtcaaaggacaactgctaaagtatcactcctatagtgaccgttgcttta |
357 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41310953 |
aattgtggcgatattgttggaccagccaatggtggattagttaagcttaatgtcaaaggacaactgctaaagtatcactcctatagtgaccgttgcttta |
41310854 |
T |
|
| Q |
358 |
tgagatcccaaatggcactgtatacagagtctctactttcactaaacttaagatgactagtgatacc |
424 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41310853 |
tgagatcccaaatggcggtgtatacagagtctctactttcactaaacttaagatgactagtgatacc |
41310787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 43164955 - 43164710
Alignment:
| Q |
10 |
ggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaagg |
109 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| || || |||||||||| |||||||||||||||| ||||||||||| |
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| T |
43164955 |
ggtgctcccagagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaagg |
43164856 |
T |
|
| Q |
110 |
aaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatg |
209 |
Q |
| |
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||| |||| ||||||||| |||||| ||||||| |||||||||||||| ||| | | ||||||||||| ||||| || || ||||||| || ||||| |
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| T |
43164855 |
aaaagacaatgtcagagattgctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatg |
43164756 |
T |
|
| Q |
210 |
gaatatggagatgcctacacttaagatatgggtgatgcaagaatac |
255 |
Q |
| |
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||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
43164755 |
gaatatggagatgtctacacttaagatatgggtaatgcaagaatac |
43164710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 346
Target Start/End: Complemental strand, 43164627 - 43164540
Alignment:
| Q |
262 |
gtggcgatattgttggaccag---ctaatggtggattagttaagcttaatgtcaaaggacaactgctaaagtatcactcctatagtga |
346 |
Q |
| |
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|||| |||||||||||||||| || |||||||||||| |||||| ||| ||||||| |||||| |||||||||||||| |||| |
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| T |
43164627 |
gtggtgatattgttggaccagttgctgatggtggattagcgaagcttgatgacaaaggaggcctgctagagtatcactcctatggtga |
43164540 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 30165650 - 30165883
Alignment:
| Q |
10 |
ggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaagg |
109 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||| |
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| T |
30165650 |
ggtggtcccagagttgggtcgttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaagg |
30165749 |
T |
|
| Q |
110 |
aaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatg |
209 |
Q |
| |
|
|| |||| || |||||| ||||| ||| ||| || || | ||| |||||||||||||| |||||||| ||||||| |||||||| |
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| T |
30165750 |
aagcgacaatggcagagatagctcttccaaatgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatg |
30165837 |
T |
|
| Q |
210 |
gaatatggagatgcctacacttaagatatgggtgatgcaagaatac |
255 |
Q |
| |
|
|||| |||||| | ||||| |||||||||||||||||||||||||| |
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|
| T |
30165838 |
gaatgtggagaggtctacagttaagatatgggtgatgcaagaatac |
30165883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 287 - 400
Target Start/End: Original strand, 30165994 - 30166107
Alignment:
| Q |
287 |
tggtggattagttaagcttaatgtcaaaggacaactgctaaagtatcactcctatagtgaccgttgctttatgagatcccaaatggcactgtatacagag |
386 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||| | ||||||| |||||| ||||||||| ||||||||||||||||||||| |||||| |||| |
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| T |
30165994 |
tggtggattagcaaagcttaatgacaaaggacaactgcaagagtatcattcctatggtgaccgttactttatgagatcccaaatggcggtgtatatagag |
30166093 |
T |
|
| Q |
387 |
tctctactttcact |
400 |
Q |
| |
|
||||| |||||||| |
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| T |
30166094 |
tctctgctttcact |
30166107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 30125225 - 30124981
Alignment:
| Q |
16 |
cccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatga |
115 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||| || || || || |||| | | |||||||||| |||||||||||||||||||| || |
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|
| T |
30125225 |
cccagagttgggttgttcttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaagcga |
30125126 |
T |
|
| Q |
116 |
cactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatat |
215 |
Q |
| |
|
|| ||||||| | ||||| ||| ||| |||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| | | |
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|
| T |
30125125 |
caatgtcagaaatagctcttccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggattct |
30125026 |
T |
|
| Q |
216 |
ggagatgcctacacttaagatatgggtgatgcaagaatacacaat |
260 |
Q |
| |
|
|||||| | || |||||||| |||||||||| |||||| |||| |
|
|
| T |
30125025 |
tgagatggatgcagttaagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
42 |
ttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
141 |
Q |
| |
|
|||||||||||||||| ||||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
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|
| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
142 |
ggtttttatagtgatt |
157 |
Q |
| |
|
| ||||||||| |||| |
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|
| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 30131178 - 30131068
Alignment:
| Q |
17 |
ccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgac |
116 |
Q |
| |
|
||||||| |||| |||||||||||| |||||||||||||| ||||| || || |||| || |||||||||||| |||||| |||||||||||||||| |
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|
| T |
30131178 |
ccagagtcgggttgttcttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgac |
30131079 |
T |
|
| Q |
117 |
actgtcagaga |
127 |
Q |
| |
|
| ||||||||| |
|
|
| T |
30131078 |
aatgtcagaga |
30131068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 30120174 - 30120068
Alignment:
| Q |
21 |
agttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactg |
120 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| || || || || || |||| | ||| |||||||||||||||||||||||||||||| |||| | |
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|
| T |
30120174 |
agttgggttgttcttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttgatttaaaggaaacgacaata |
30120075 |
T |
|
| Q |
121 |
tcagaga |
127 |
Q |
| |
|
||||||| |
|
|
| T |
30120074 |
tcagaga |
30120068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
225 |
tacacttaagatatgggtgatgcaagaatacaca |
258 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 21426577 - 21426703
Alignment:
| Q |
16 |
cccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatga |
115 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||||||| || || || | |||| | |||||||||||||||| ||||||||||||||| | |
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|
| T |
21426577 |
cccagagtcgggtcgttcttaaatggggctattcattggctggttcataattctgagaccaaccgggatgttattattgcccttgatttaaaggaaacaa |
21426676 |
T |
|
| Q |
116 |
cactgtcagagactgctctcccagatg |
142 |
Q |
| |
|
|| ||||||||| ||||| ||||||| |
|
|
| T |
21426677 |
caatgtcagagatagctcttccagatg |
21426703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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