View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7425_high_9 (Length: 389)
Name: NF7425_high_9
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7425_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 14658826 - 14658540
Alignment:
| Q |
16 |
atgtgacccaagagtaaccagcagcaacgtaaatgtatttacactgaaatcaattttgtagaatcaagatcatgtaaaatcaaatttataaacatacata |
115 |
Q |
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| T |
14658826 |
atgtgacccaagagtaaccagcaacaatgtaaatgtatttatactgaaatcaattttgtagaatcaagatcatgcaaaatcaaatttataagcatacata |
14658727 |
T |
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| Q |
116 |
atggtttttagctaaaaggaatatcaattaggtcagaagtaacttagtgctatgatcatcgaatatgtgccctttgtttctaacaacactggttggagaa |
215 |
Q |
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||| ||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14658726 |
atgatttttagctaaaaagaatatcaattaggtcaaaagtaacttagtactatgatcatcgaatatgtgccctttgtttctaacaacactggttggagaa |
14658627 |
T |
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| Q |
216 |
gtgtgttgacctcaaaaagagaaggaaaaaataataataacatgttgtcatgatattccgaccatggtgggagttctagaaaaatca |
302 |
Q |
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| T |
14658626 |
atgtgttgacctcaaaaagagaaggaaaaaataataataacatgctgtcatgaaattctgaccacggtggaaattctagaaaaatca |
14658540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 45336708 - 45336634
Alignment:
| Q |
305 |
gttttcttgctggttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaat |
380 |
Q |
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| T |
45336708 |
gttttcttgctggttttctctcaccctcaaagttttacactagttttctaacctcacaga-cccgttaagatcaat |
45336634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 14662731 - 14662669
Alignment:
| Q |
318 |
ttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaata |
381 |
Q |
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| T |
14662731 |
ttttctctcaccctcaaaattttacactgattttctaacctcataga-cccgttaagatcaata |
14662669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 32798455 - 32798381
Alignment:
| Q |
305 |
gttttcttgctggttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaat |
380 |
Q |
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| T |
32798455 |
gttttcttgctggttttctctcaccctcaaagttttacactagttttctaacctcacaga-cccgttaagatcaat |
32798381 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 44732292 - 44732218
Alignment:
| Q |
305 |
gttttcttgctggttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaat |
380 |
Q |
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||||||||||||||||||||||||||||||| || || ||| |||||||| ||||||||| ||||||||||||||| |
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| T |
44732292 |
gttttcttgctggttttctctcaccctcaaagttctatactagttttctaccctcacaga-cccgttaagatcaat |
44732218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 381
Target Start/End: Original strand, 13110845 - 13110921
Alignment:
| Q |
305 |
gttttcttgctggttttctctcaccctcaaa-attttacactggttttctaacctcacagaccccgttaagatcaata |
381 |
Q |
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| T |
13110845 |
gttttcttgctggttttctctcaccctaaaattttttacactagttttctaatctcacaga-tcagttaagatcaata |
13110921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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