View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7425_low_1 (Length: 603)
Name: NF7425_low_1
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7425_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 17 - 599
Target Start/End: Complemental strand, 42017210 - 42016629
Alignment:
| Q |
17 |
aaatgcatatggagcaaacctgtcatatcatagcataccatcagctaaagaaaaagagtatggacatgacagttgctgtctgaacacagtttcaatttca |
116 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42017210 |
aaatgcatatggagcaaacctgtcatatcataccataccatcagctaaagataaagagtatggacatgacagttgctgtctgaacacagtttcaatttca |
42017111 |
T |
|
| Q |
117 |
aagtatggaaaccaaagttgactttaggatgttatattccaactcagattaaaaaacacatatcaaagaagtaacagtaaaacggcatataggcatataa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42017110 |
aagtatggaaaccaaagttgactttaggatgttatattccaactcagattaaaaatcacatatcaaagaagtaacagtaaaacggcatataggcatataa |
42017011 |
T |
|
| Q |
217 |
gccaacaagagaacatttttgaaatacaaagccctgccttattaaatgaattatgagccctcgaggattgagagaattttgattgtgttaaacttaaaat |
316 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42017010 |
gccaacaaaagaacatttttgaaatacaaagccctgccttattaaatgaattatgagccctcgaggattgagagaattttgattgtgttaaacttaaaat |
42016911 |
T |
|
| Q |
317 |
caagttctgacaaaactttgaatgttgctagttaactcttctgcgttattaacctttcatctccttctggacttctaannnnnnnacttgaaaaagacaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
42016910 |
caagttctgacaaaactttgaatgttgctagttaactcttctgcgttattaacctttcatttccttctggacttctaatttttttacttgaaaaagacaa |
42016811 |
T |
|
| Q |
417 |
tcaaccatatcaatataactacaatttcacctctcttagcctactcttacaaacttatgtaaaattaacttctgatcccgcaaataagcaaaaatccagc |
516 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42016810 |
tcaaccatattaatataactacaatttcacctctcttggccaactcttacaaacttatgtaaaattaacttctgatcccgcaaataagcaaaaatccaac |
42016711 |
T |
|
| Q |
517 |
ggcagagagcggccaggtagtgtcatttagagggatgaaaagcatgataacataaataattgtgaaaaataatcacctccata |
599 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42016710 |
ggcagagagcggccaggtagtgtcatttaga-ggatgaaaagcctgataacataaataattgtgaaaaataatcacctccata |
42016629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 17 - 599
Target Start/End: Complemental strand, 1250430 - 1249849
Alignment:
| Q |
17 |
aaatgcatatggagcaaacctgtcatatcatagcataccatcagctaaagaaaaagagtatggacatgacagttgctgtctgaacacagtttcaatttca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1250430 |
aaatgcatatggagcaaacctgtcatatcaaaccataccatcagctaaagataaagagtatggacatgacagttgctgtctgaacacagtttcaatttca |
1250331 |
T |
|
| Q |
117 |
aagtatggaaaccaaagttgactttaggatgttatattccaactcagattaaaaaacacatatcaaagaagtaacagtaaaacggcatataggcatataa |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1250330 |
aagtatggaaaccaaagttgactttaggatgttatattccaactcagattaaaaaacacatatcaaagaagtaacagtaaaacggcatataggcatataa |
1250231 |
T |
|
| Q |
217 |
gccaacaagagaacatttttgaaatacaaagccctgccttattaaatgaattatgagccctcgaggattgagagaattttgattgtgttaaacttaaaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1250230 |
gccaacaagagaacatttttgaaatacaaagccctgccttattaaatgaattatgagccctcgaggattgagagaattttgattgtgttaaacttaaaat |
1250131 |
T |
|
| Q |
317 |
caagttctgacaaaactttgaatgttgctagttaactcttctgcgttattaacctttcatctccttctggacttctaannnnnnnacttgaaaaagacaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
1250130 |
caagttctgacaaaactttgaatgttgctagttaactcttctgcgttattaacctttcatttccttctggacttctaatttttttacttgaaaaagacaa |
1250031 |
T |
|
| Q |
417 |
tcaaccatatcaatataactacaatttcacctctcttagcctactcttacaaacttatgtaaaattaacttctgatcccgcaaataagcaaaaa-tccag |
515 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1250030 |
tcaaccatattaatataactacaatttcacc-ctcttggcctactcttacaaacttatgtaaaattaacttctgatcccgcaaataagcaaaaagtccag |
1249932 |
T |
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| Q |
516 |
cggcagagagcggccaggtagtgtcatttagagggatgaaaagcatgataacataaataattgtgaaaaataatcacctccata |
599 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1249931 |
cggcagagagcggccaggtagtgtcatttaga-ggatgaaaagcctgataacataaataattgtgaaaaataatcacctccata |
1249849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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