View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7425_low_10 (Length: 375)
Name: NF7425_low_10
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7425_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 354
Target Start/End: Original strand, 5035683 - 5036014
Alignment:
| Q |
12 |
tgaaactactgttggtgatggacagatcttgttttgagacgtggtagagagaccttattctgcgggggttatcggtgaaacctagattcccatcaggacg |
111 |
Q |
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| T |
5035683 |
tgaaactactgtttgtgattggcatatcttgttctgagacgtgatagagagactttattctgcgggggtgatcggcaaaacctagattcccattaggacg |
5035782 |
T |
|
| Q |
112 |
aggaaggttgaaggtgttgttttcctcgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgcttctgttgctgtt |
211 |
Q |
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| T |
5035783 |
aagaagtttgaatgtgttgttctcctcgtcgttgaggaatttgaagatgttttcccataaatcctctggtaaatttgaacgtgttgcttctgtttctgtt |
5035882 |
T |
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| Q |
212 |
gccatttttgttctttttcctttcttagggttttcctctgctgctgctattttatctgcttcctcttccgccattgtttttgaaccacgaagagaaggaa |
311 |
Q |
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| T |
5035883 |
ccca---------tttttcgtttcttagggttttcctctgttgctgctattttctctgcttcctctgccgccat--gttttgaaccacgaagagaaggaa |
5035971 |
T |
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| Q |
312 |
gaacaagatggaatggaacttggaagaaataataattagggtt |
354 |
Q |
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| T |
5035972 |
gaacaagatggaatggaacttggaagaaagaatacttacggtt |
5036014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 2525818 - 2526003
Alignment:
| Q |
12 |
tgaaactactgttggtgatggacagatcttgttttgagacgtggtagagagaccttattctgcgggggttatcggtg-aaacctagattcccatcaggac |
110 |
Q |
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| T |
2525818 |
tgaaactaccgttggtgatgggtagagattgttttgagacgtggtagagagttcctattctgcgctggatat-gttgaaaacctatattcccatcaagac |
2525916 |
T |
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| Q |
111 |
gaggaaggttgaaggtgttgttttcctcgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttg |
197 |
Q |
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| T |
2525917 |
gaagaaggttgaaggtgttgttgtcctcgtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatatgaacgtgttg |
2526003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 114 - 264
Target Start/End: Original strand, 2536654 - 2536801
Alignment:
| Q |
114 |
gaaggttgaaggtgttgttttcctcgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgcttctgttgctgttgc |
213 |
Q |
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| T |
2536654 |
gaaggctgaaggtgttgctgtcctcgtggttgagaaatttgaagatgtattcccataactcctctggtaaatatgaacgtgttg---gtgttgctgttga |
2536750 |
T |
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| Q |
214 |
catttttgttctttttcctttcttagggttttcctctgctgctgctatttt |
264 |
Q |
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| T |
2536751 |
aaattttgttctttttcgtttcctagggtttttcactgctgcttctatttt |
2536801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 2486430 - 2486547
Alignment:
| Q |
140 |
tcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgcttctgttgctgttgccatttttgttctttttcctttcttag |
239 |
Q |
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| T |
2486430 |
tcgttgaggaatttaaagattcgctcccataattcctctgggaaatacgagcatgttgcttctgttgctgttgccatttttgttctttttcgtttcttat |
2486529 |
T |
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| Q |
240 |
ggttttcctctgctgctg |
257 |
Q |
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|||||||| |||| |||| |
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| T |
2486530 |
ggttttccgctgcggctg |
2486547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 2491241 - 2491320
Alignment:
| Q |
118 |
gttgaaggtgttgttttcctcgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttg |
197 |
Q |
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||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||| | |||||||||| ||||||||||| |
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| T |
2491241 |
gttgaagatgttgttgtcctcgtcgttcaggaatttgaggatgtgttcccataacttctctggtaaacatgaacgtgttg |
2491320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 2625348 - 2625296
Alignment:
| Q |
139 |
gtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaac |
191 |
Q |
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| T |
2625348 |
gtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatctgaac |
2625296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 340
Target Start/End: Original strand, 2536835 - 2536891
Alignment:
| Q |
280 |
cgccattgtttttgaaccacgaagagaaggaagaacaagatggaatggaacttggaagaaa |
340 |
Q |
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| T |
2536835 |
cgccattgtttttgaaccaggaagagaag----aacaagatggaatggaacttggaagaaa |
2536891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 245
Target Start/End: Original strand, 2519366 - 2519473
Alignment:
| Q |
135 |
cctcgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgcttctgttgctgttgccatttttgttctttttccttt |
234 |
Q |
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|||||||||||||||| |||| ||| | |||||||| ||||| ||||||| ||||| || || || ||||| ||||||||||||||||||| ||| |
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| T |
2519366 |
cctcgtcgttgaggaacttgacaatgcgctcccataactcctccggtaaatatgaacatgatg---ttgctgctgctgccatttttgttctttttggttt |
2519462 |
T |
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| Q |
235 |
cttagggtttt |
245 |
Q |
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||||||||||| |
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| T |
2519463 |
cttagggtttt |
2519473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 2467679 - 2467738
Alignment:
| Q |
139 |
gtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgc |
198 |
Q |
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| T |
2467679 |
gtcgttgaggaatttgaagatgcgctcccataactcctttggtaaatatgaacatgttgc |
2467738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 5102005 - 5101944
Alignment:
| Q |
137 |
tcgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgc |
198 |
Q |
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| T |
5102005 |
tcgtcgttgaggaatttgaagatgcgctcccataactcatccggtaaatatgaacctgttgc |
5101944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 2547613 - 2547655
Alignment:
| Q |
143 |
ttgaggaatttgaagatgtgttcccataaatcctctggtaaat |
185 |
Q |
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| T |
2547613 |
ttgaggaatttgaagatgtgctcccataactcatctggtaaat |
2547655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 2380097 - 2380052
Alignment:
| Q |
146 |
aggaatttgaagatgtgttcccataaatcctctggtaaatttgaac |
191 |
Q |
| |
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| T |
2380097 |
aggaatttgatgatgtattcccataactcatctggtaaatttgaac |
2380052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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