View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7425_low_11 (Length: 365)
Name: NF7425_low_11
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7425_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 38465722 - 38465385
Alignment:
| Q |
20 |
ttgtttcttatatgcctctcttacttcattatcctcttattaacaacattttaaaacaactacaattcatttcattgcatataaattagtgtcacatgaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38465722 |
ttgtttcttatatgcctctcttacttcattatcctcttattgacaacattttaaaacaactacaattcatttcattgcatataaattagtgtcacatgaa |
38465623 |
T |
|
| Q |
120 |
-ctcaaaacaacattcacaaatggaaactaatgttttcaggcagaacagaatttcaacacaaacttcaac---tcactacaacctcatcaaacatccacc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38465622 |
actcaaaacaacattcacaaatggaaactaatgttttcaggcagaacagaatttcaacactaacttcaacaactcactacaacctcatcaaacatccacc |
38465523 |
T |
|
| Q |
216 |
ttctatagtttctgtgctcagaaagccttcaaatcatgacattacagaagaaacagcaaaaagtgtctacaaagataactggtttgatctgatagcaata |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38465522 |
ttctatagtttctgtgctcagaaagccttcaaatcatgacattacagaagaaacagcaaaaagtgtctacaaagataactggtttgatctgatagcaata |
38465423 |
T |
|
| Q |
316 |
aaccatttatcaaaaacagttcaagctgccacaggttc |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38465422 |
aaccatttatcaaaaacagttcaagctgccacaggttc |
38465385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University