View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7425_low_12 (Length: 350)
Name: NF7425_low_12
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7425_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 44526410 - 44526724
Alignment:
| Q |
18 |
catgcacatcgatgggaatggtccctaacaaaagtttaaataattggtggagcatgtggatttaaaagagatatttagcaataaaaatgatatcaaaaaa |
117 |
Q |
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| T |
44526410 |
catgcacatcgatgggaatggtccctaacaaaagtttaaataattggtggagcatgtggatttaaaagagatatttagcaataaaaatgatatcaaaaaa |
44526509 |
T |
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| Q |
118 |
ttcattctatttattatgttaggttgaaagctaactgaatttgtcaccagttacttccattcataaatggtgtttgccataataaaatgacctatatcta |
217 |
Q |
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| T |
44526510 |
ttcattctatttattatgttaggttgaaagctaactgaatttgtcaccagttacttccattcataaatggtgtttgccataataaaatgacctatatcta |
44526609 |
T |
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| Q |
218 |
tgctctatctaaccaataaatcattaattcatttcnnnnnnnattacaaaaacataatcaagtcgtcgttaacaacctaacagactaaaattagtttact |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44526610 |
tgctctatctaaccaataaatcattaattcatttcttttcttattaaaaaaacataatcaagtcgtctttaacaacctaacagactaaaattagtttact |
44526709 |
T |
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| Q |
318 |
ttctcaaactatggt |
332 |
Q |
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||||||||||||||| |
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| T |
44526710 |
ttctcaaactatggt |
44526724 |
T |
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