View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7425_low_14 (Length: 308)
Name: NF7425_low_14
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7425_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 63 - 290
Target Start/End: Complemental strand, 53431353 - 53431126
Alignment:
| Q |
63 |
cattgaacaagaccaacaattctttctttgttagcccgatattgcagcaccaggtgttaacattcttgcagcatggactggaaatgacacagaaaatgtt |
162 |
Q |
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| T |
53431353 |
cattgaacaagaccaacaattctttttttgttagcccgatatcgcagcaccaggtgttaacattcttgcagcatggactggaaatgacacagaaaatgtt |
53431254 |
T |
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| Q |
163 |
ccaaaaggnnnnnnnccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaacc |
262 |
Q |
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| T |
53431253 |
ccaaaaggaaaaaaaccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaacc |
53431154 |
T |
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| Q |
263 |
ctacttggagtgcctccgcaattagatc |
290 |
Q |
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| T |
53431153 |
ctacttggagtgcctccgcaattagatc |
53431126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 66 - 290
Target Start/End: Original strand, 48374412 - 48374635
Alignment:
| Q |
66 |
tgaacaagaccaacaattctttctttgttagcccgatattgcagcaccaggtgttaacattcttgcagcatggactggaaatgacacagaaaatgttcca |
165 |
Q |
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| T |
48374412 |
tgaacaagaccaacaatactttctttgt-agcctgatattgcagcaccaggtgttaccattcttgcagcatggattggaaatgacgatgaaaatgttcca |
48374510 |
T |
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| Q |
166 |
aaaggnnnnnnnccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaacccta |
265 |
Q |
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| T |
48374511 |
aagggaaaaaagcccttgccgtataaacttgaaaccggaacttccatgtcatgcccacatgtttcgggccttgcaggtagcatcaaatctaggaacccta |
48374610 |
T |
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| Q |
266 |
cttggagtgcctccgcaattagatc |
290 |
Q |
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| T |
48374611 |
cttggagtgcctctgcaatcagatc |
48374635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 77 - 290
Target Start/End: Complemental strand, 53423684 - 53423471
Alignment:
| Q |
77 |
aacaattctttctttgttagcccgatattgcagcaccaggtgttaacattcttgcagcatggactggaaatgacacagaaaatgttccaaaaggnnnnnn |
176 |
Q |
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| T |
53423684 |
aacaattctttcttttgtagcccgatattgcagcaccaggtgttgccattcttgcagcatcgattgctaataatgtaactgatgttccaaaagggaaaaa |
53423585 |
T |
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| Q |
177 |
nccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcc |
276 |
Q |
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| T |
53423584 |
gccatcaccatataactttaaatcagggacttctatgtcatgcccacatgtttcaggccttgcaggcagcattaaatctagaaaccctacttggagtgcc |
53423485 |
T |
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| Q |
277 |
tccgcaattagatc |
290 |
Q |
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| T |
53423484 |
tctgcaatcagatc |
53423471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 290
Target Start/End: Complemental strand, 53308435 - 53308221
Alignment:
| Q |
76 |
caacaattctttctttgttagcccgatattgcagcaccaggtgttaacattcttgcagcatggactggaaatgacacagaaaatgttccaaaaggnnnnn |
175 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| |||||| ||| ||||| | ||||||||||||| |
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| T |
53308435 |
caacaattctttcttttgtagcctgatattgcagcaccaggtgttgccattcttgcatcatggattggtaatgatgtaactgatgttccaaaagggaaaa |
53308336 |
T |
|
| Q |
176 |
nnccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgc |
275 |
Q |
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| T |
53308335 |
agccctcaccatataactttaaatcggggacttctatgtcatgccctcatgtttcaggcgttgcaggcagaattaaatttaaaaaccctatttggagtgc |
53308236 |
T |
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| Q |
276 |
ctccgcaattagatc |
290 |
Q |
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| T |
53308235 |
ctctgcaatcagatc |
53308221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 26095727 - 26095642
Alignment:
| Q |
205 |
acttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcctccgcaattagatc |
290 |
Q |
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||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| |
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| T |
26095727 |
acttccatgtcatgcccacatgtttcaggccttgcaggtagcatcaaatctaggaaccctacttggagtgcctctgcaatcagatc |
26095642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 26095824 - 26095755
Alignment:
| Q |
71 |
aagaccaacaattctttctttgttagcccgatattgcagcaccaggtgttaacattcttgcagcatggact |
141 |
Q |
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|||||||| |||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
26095824 |
aagaccaaaaattctctctttgt-agcctgatattgcagcaccaggtgttaacattgttgcagcagggact |
26095755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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