View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7425_low_17 (Length: 271)
Name: NF7425_low_17
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7425_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 43473276 - 43473034
Alignment:
| Q |
11 |
gtgttaacaagacaaccatcaatgcttttatgcatagaatcttcacgtgctgatttggctgggaaagaaaagctctgagaaaggattgacctttgttttc |
110 |
Q |
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| T |
43473276 |
gtgttaacaagacaaccatcaatgcttttatgcatagaatctttacgtgctgatttggctgggaaagaaaagctctgagaaaggattgacctttgttttc |
43473177 |
T |
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| Q |
111 |
tagatattgaagttgtgcccttcaaattggatttatctttaacaaatttgttgttcttggaagcaacatgttctctattctttgttccctaaccatgtta |
210 |
Q |
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| T |
43473176 |
tagatattgaagttgtgcccttcaaattggatttatctttaacaaatttgttgttcttggaagcaacattttctctattctttgttccctaaccatgtta |
43473077 |
T |
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| Q |
211 |
aatttagtcagaacaagttttctatcatttgtcaatcgcagaa |
253 |
Q |
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| T |
43473076 |
aatttagtcagaacaagttttctatcatttgtcaatcgcagaa |
43473034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 2081624 - 2081697
Alignment:
| Q |
69 |
ctgggaaagaaaagctctgagaaaggattgacctttg-ttttctagatattgaagttgtgcccttcaaattgga |
141 |
Q |
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|||||| |||||||||||||||| | |||| |||||| ||||||| || ||||||||||||| ||||||||||| |
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| T |
2081624 |
ctgggacagaaaagctctgagaatgaattggcctttgtttttctatatgttgaagttgtgcctttcaaattgga |
2081697 |
T |
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