View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7425_low_18 (Length: 260)
Name: NF7425_low_18
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7425_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 13397476 - 13397244
Alignment:
| Q |
13 |
aaaatgaagaattttactatgaaatttttgctccaatagttaagctcaatactatcatgtttctattaagtattgttgccagtgaaaatctttatcttga |
112 |
Q |
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| T |
13397476 |
aaaaggaagaattttactatgaaatttt-gttccaatagttaagctcaatactatcatgtttctattaagtattgttgccattgaaaatctttatcttga |
13397378 |
T |
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| Q |
113 |
atagttggatgtgaagactgcatttcttcgtggagacttaattgaggatatatacatgcaacaacctgaaggattctcaaaagaa-tgggaaaaatgcta |
211 |
Q |
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| T |
13397377 |
atagttggatgtgaagactgcatttcttcgtggagacttagttgaggatatatacatgcaccaacctgaaggattctcataagaagtggggaaaatggtg |
13397278 |
T |
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| Q |
212 |
ggtaaactaaagaagagcatgtatggactaaaac |
245 |
Q |
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| T |
13397277 |
ggaaaactaaagaagagcatgtatggactaaaac |
13397244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 6692011 - 6692172
Alignment:
| Q |
36 |
atttttgctccaatagttaagctcaatactatcatgtttctattaagtattgttgccagtgaaaatctttatcttgaatagttggatgtgaagactgcat |
135 |
Q |
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| T |
6692011 |
atttttgctccagtggtgaagctcaatactatcaggtctgtcttaagtattgttgccagtgaaaatctctatcttgagcagttagatgtgaagactgcat |
6692110 |
T |
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| Q |
136 |
ttcttcgtggagacttaattgaggatatatacatgcaacaacctgaaggattctcaaaagaa |
197 |
Q |
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| T |
6692111 |
ttcttcatggagacttagtggaggaaatatacatgcaccaacccgaaggattctcagaagaa |
6692172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 189
Target Start/End: Complemental strand, 796810 - 796657
Alignment:
| Q |
36 |
atttttgctccaatagttaagctcaatactatcatgtttctattaagtattgttgccagtgaaaatctttatcttgaatagttggatgtgaagactgcat |
135 |
Q |
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| T |
796810 |
atttttgctccagtggtgaagctcaatactatcaggtctgtcttaagtattgttgccagtgaaaatctctatcttgagcagttagatgtgaagactgcat |
796711 |
T |
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| Q |
136 |
ttcttcgtggagacttaattgaggatatatacatgcaacaacctgaaggattct |
189 |
Q |
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| T |
796710 |
ttcttcatggagacttagtggaggaaatatacatgcaccaacccgaaggattct |
796657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 8273017 - 8273170
Alignment:
| Q |
36 |
atttttgctccaatagttaagctcaatactatcatgtttctattaagtattgttgccagtgaaaatctttatcttgaatagttggatgtgaagactgcat |
135 |
Q |
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| T |
8273017 |
atttttgctccagtggtgaagctcaatactatcaggtctgtcttaagtattgttgccagtgaaaatctctatcttgagcagttagatgtgaagactgcat |
8273116 |
T |
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| Q |
136 |
ttcttcgtggagacttaattgaggatatatacatgcaacaacctgaaggattct |
189 |
Q |
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| T |
8273117 |
ttcttcatggagacttagtggaggaaatatacatgcaccaacccgaaggattct |
8273170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 19943961 - 19944114
Alignment:
| Q |
36 |
atttttgctccaatagttaagctcaatactatcatgtttctattaagtattgttgccagtgaaaatctttatcttgaatagttggatgtgaagactgcat |
135 |
Q |
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| T |
19943961 |
atttttgctccagtggtgaagctcaatactatcaggtctgtcttaagtattgttgccagtgaaaatctctatcttgagcagttagatgtgaagactgcat |
19944060 |
T |
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| Q |
136 |
ttcttcgtggagacttaattgaggatatatacatgcaacaacctgaaggattct |
189 |
Q |
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| T |
19944061 |
ttcttcatggagacttagtggaggaaatatacatgcaccaacccgaaggattct |
19944114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 38109807 - 38109876
Alignment:
| Q |
117 |
ttggatgtgaagactgcatttcttcgtggagacttaattgaggatatatacatgcaacaacctgaaggatt |
187 |
Q |
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| T |
38109807 |
ttggatgtgaagactgcatttc-tcacgaagacttagttgaggagatatacatataccaacctgaaggatt |
38109876 |
T |
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