View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7425_low_19 (Length: 260)
Name: NF7425_low_19
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7425_low_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 29005893 - 29005689
Alignment:
| Q |
1 |
agtagcagagacaaaagtagcaagattaggttaaaatagaaatggtaggccaatattcaaaatagaagtccagaactaaacttttcaaattgaaattaaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29005893 |
agtagcagagacaaaagtagcaatattaggttaaaatagaaatggtaggccaatattcaaaatagaagtccagaactaaacttttcaaattgaaattaaa |
29005794 |
T |
|
| Q |
101 |
ggcattttgcaggcaagagatggaggagggtccatgtatgtggcttcttataaattaaaaactttaacaagctggttctacaaaagttccagcccaggca |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
29005793 |
ggcattttgcaggcaagatatggaggagggtccatgtatgtggcttcttataaatgaaaatctttaacaagctggttccacaaaagttccagcccagcca |
29005694 |
T |
|
| Q |
201 |
acata |
205 |
Q |
| |
|
||||| |
|
|
| T |
29005693 |
acata |
29005689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University