View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7425_low_21 (Length: 251)
Name: NF7425_low_21
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7425_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 79 - 249
Target Start/End: Original strand, 47341477 - 47341648
Alignment:
| Q |
79 |
gtaaagactagaattggagtatttatcaccataaaaaagtaggatcaaatgtactctctgacctttcaagtctttgtcatt-tacgattttgacatcann |
177 |
Q |
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| T |
47341477 |
gtaaagactagaattggagtatttatcaccataaaaaagtaggatcaaatgtactctttgacctttcaagtctttgtcattgtacgattttgacatcatt |
47341576 |
T |
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| Q |
178 |
nnnnngaagttttgactcccaatatgttttttcctctgaaatttaccgtaaagcgaaaccatttaacagggt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47341577 |
tttttgaagttttgactcccaatatgttttttcctctgaaatttaccgtaaagcgaaaccatttaacagggt |
47341648 |
T |
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