View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7425_low_5 (Length: 451)
Name: NF7425_low_5
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7425_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 24 - 432
Target Start/End: Original strand, 47349557 - 47349962
Alignment:
| Q |
24 |
catcccaaatgctctgaatctgtgccacgtgtctcttcaaactggtgggaaacactatttaggacccttcgcgttgatcgacaagattaatagccacgag |
123 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47349557 |
catcccaaatgctccgaatctctgccacgtgtctcttcaaactggtgggaaacactatttaggacccttcgcgttgatcgacaagattaatagccacgag |
47349656 |
T |
|
| Q |
124 |
ccgccctttacggaggatctaccgcgtttggatataccaaatttctattacactcaggaagatatcttgtttgaagaaaccaaaaagaaagagggtttga |
223 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47349657 |
ccgtcctttacggaggatctaccgcgtttggatataccaaatttctattacactcaggaagatatcttgtttgaagaaaccaaaaagaaagagggtttga |
47349756 |
T |
|
| Q |
224 |
gttggtctgttcatagaccccttctcatctttggattctcaccttacagtttgatgaatattgttgttggcacgctttgcctttacgctgcaatttgcaa |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47349757 |
gttggtctgttcatagaccccttctcatctttggattctcaccttacagtttgatgaa---tgttgttggcacgctttgcctttacgctgcaatttgcaa |
47349853 |
T |
|
| Q |
324 |
gcatgaacacatttctttgaaatttcccggtaccaagagagcttgggagagttattatatggcttcggatgcagatttgattgcagagcaacacatttgg |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47349854 |
gcatgaacacatttctttgaaatttcccggtaccaagagagcttgggagagttattatatggcttcggatgcagatttgattgcagagcaacacatttgg |
47349953 |
T |
|
| Q |
424 |
gctgcagtg |
432 |
Q |
| |
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||||||||| |
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| T |
47349954 |
gctgcagtg |
47349962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 25 - 432
Target Start/End: Original strand, 47347019 - 47347423
Alignment:
| Q |
25 |
atcccaaatgctctgaatctgtgccacgtgtctcttcaaactggtgggaaacactatttaggacccttcgcgttgatcgacaagattaatagccacgagc |
124 |
Q |
| |
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|||||||| || | |||||| |||||||||| |||||||| ||||| ||||||||||||||||| || | |||||| ||||||||||| || |||| |
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| T |
47347019 |
atcccaaacgcaccgaatctccgccacgtgtcacttcaaaccggtggaaaacactatttaggaccgtttgatctgatcgggaagattaatagtcatgagc |
47347118 |
T |
|
| Q |
125 |
cgccctttacggaggatctaccgcgtttggatataccaaatttctattacactcaggaagatatcttgtttgaagaaaccaaaaagaaagagggtttgag |
224 |
Q |
| |
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|||| || ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
47347119 |
cgccgttcacggaggatttaccgcgtttagatgcgccaaatttctattacactcaggaagatattttgtttgaagaaactcaaaagaaagagggtttgag |
47347218 |
T |
|
| Q |
225 |
ttggtctgttcatagaccccttctcatctttggattctcaccttacagtttgatgaatattgttgttggcacgctttgcctttacgctgcaatttgcaag |
324 |
Q |
| |
|
|||||||||||||||||| | | || |||||||| |||||||| |||||||||||| | |||| | || ||||| |||| ||||||||||||||| |
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| T |
47347219 |
ttggtctgttcatagacctcaagttatatttggattttcaccttatagtttgatgaatctcgttggt---acactttgtgtttatgctgcaatttgcaag |
47347315 |
T |
|
| Q |
325 |
catgaacacatttctttgaaatttcccggtaccaagagagcttgggagagttattatatggcttcggatgcagatttgattgcagagcaacacatttggg |
424 |
Q |
| |
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|| ||| || | ||||||||||||||||| ||| ||||||||||| ||||| | ||||||| ||||| |||||||||||||||||||| ||||||| |
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| T |
47347316 |
cacgaaggtgttccgttgaaatttcccggtacaaagggagcttgggagtcttattctgtggcttctgatgcggatttgattgcagagcaacatatttggg |
47347415 |
T |
|
| Q |
425 |
ctgcagtg |
432 |
Q |
| |
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| |||||| |
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| T |
47347416 |
ccgcagtg |
47347423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 163 - 432
Target Start/End: Complemental strand, 3819190 - 3818924
Alignment:
| Q |
163 |
aatttctattacactcaggaagatatcttgtttgaagaaaccaaaaagaaagagggtttgagttggtctgttcatagaccccttctcatctttggattct |
262 |
Q |
| |
|
||||||||||| || | |||||| | |||||||||||||| |||||||| ||| ||||||||||||||||||| || ||||||||||||||||| | |
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| T |
3819190 |
aatttctattatacacttgaagatgttttgtttgaagaaacaggtaagaaagaaggtgtgagttggtctgttcataggccacttctcatctttggatttt |
3819091 |
T |
|
| Q |
263 |
caccttacagtttgatgaatattgttgttggcacgctttgcctttacgctgcaatttgcaagcatgaacacatttctttgaaatttcccggtaccaagag |
362 |
Q |
| |
|
||||||||||| ||||||||| | |||| || |||| |||||||||||||||| |||||||| || | |||| |||||| || || ||| |
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| T |
3819090 |
caccttacagtatgatgaata---tcattggaactatttgtgtttacgctgcaatttgtaagcatgagggtgttccgttgagatttccagggactaagtt |
3818994 |
T |
|
| Q |
363 |
agcttgggagagttattatatggcttcggatgcagatttgattgcagagcaacacatttgggctgcagtg |
432 |
Q |
| |
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||||||||||| ||| || |||||||| ||||||||||||||||| || ||||| ||||||||||||||| |
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| T |
3818993 |
agcttgggagaattactacatggcttctgatgcagatttgattgctgaacaacatatttgggctgcagtg |
3818924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 163 - 432
Target Start/End: Original strand, 47338687 - 47338953
Alignment:
| Q |
163 |
aatttctattacactcaggaagatatcttgtttgaagaaaccaaaaagaaagagggtttgagttggtctgttcatagaccccttctcatctttggattct |
262 |
Q |
| |
|
||||||||||| || | |||||| | |||||||||||||| |||||||| || ||||||||||||||||||| || ||||||||||||||||| | |
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|
| T |
47338687 |
aatttctattatacacttgaagatgttttgtttgaagaaacagggaagaaagaaggcgtgagttggtctgttcataggccacttctcatctttggatttt |
47338786 |
T |
|
| Q |
263 |
caccttacagtttgatgaatattgttgttggcacgctttgcctttacgctgcaatttgcaagcatgaacacatttctttgaaatttcccggtaccaagag |
362 |
Q |
| |
|
||||||||||| ||||||||| | |||| || |||| |||||||||||||||| |||||||| || | |||| |||||| || || ||| |
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|
| T |
47338787 |
caccttacagtatgatgaata---tcattggaactatttgtgtttacgctgcaatttgtaagcatgagggtgttccgttgagatttccagggactaagtt |
47338883 |
T |
|
| Q |
363 |
agcttgggagagttattatatggcttcggatgcagatttgattgcagagcaacacatttgggctgcagtg |
432 |
Q |
| |
|
||||||||||| ||| || |||||||| ||||| ||||||||||| |||||||| ||||||||||||||| |
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|
| T |
47338884 |
agcttgggagaattactacatggcttctgatgctgatttgattgctgagcaacatatttgggctgcagtg |
47338953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 329
Target Start/End: Complemental strand, 5391203 - 5391164
Alignment:
| Q |
290 |
ttggcacgctttgcctttacgctgcaatttgcaagcatga |
329 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
5391203 |
ttggcacgctttgtgtttacgctgcaatttgcaagcatga |
5391164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 329
Target Start/End: Complemental strand, 5399922 - 5399883
Alignment:
| Q |
290 |
ttggcacgctttgcctttacgctgcaatttgcaagcatga |
329 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| |
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| T |
5399922 |
ttggcacgctttgtgtttacgctgcaatttgcaagcatga |
5399883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 5401520 - 5401451
Alignment:
| Q |
25 |
atcccaaatgctctgaatctgtgccacgtgtctcttcaaactggtgggaaacactatttaggacccttcg |
94 |
Q |
| |
|
||||||||||||| ||||| | ||| ||||||||||| ||||||| || |||||| |||||||||||| |
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|
| T |
5401520 |
atcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagcactatgtaggacccttcg |
5401451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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