View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7425_low_7 (Length: 404)

Name: NF7425_low_7
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7425_low_7
NF7425_low_7
[»] chr8 (9 HSPs)
chr8 (10-386)||(44912590-44912966)
chr8 (10-188)||(44913573-44913751)
chr8 (251-350)||(197917-198017)
chr8 (251-350)||(312754-312854)
chr8 (240-350)||(30406025-30406136)
chr8 (139-207)||(25479794-25479862)
chr8 (138-211)||(6414582-6414655)
chr8 (251-350)||(43807716-43807816)
chr8 (251-295)||(41949682-41949726)
[»] chr4 (8 HSPs)
chr4 (28-185)||(40414457-40414615)
chr4 (60-188)||(24412778-24412906)
chr4 (81-180)||(24412922-24413021)
chr4 (135-217)||(26905317-26905398)
chr4 (251-344)||(8892854-8892948)
chr4 (234-350)||(50628146-50628263)
chr4 (234-345)||(31358981-31359093)
chr4 (251-350)||(44151382-44151482)
[»] chr6 (5 HSPs)
chr6 (29-176)||(5437791-5437938)
chr6 (251-350)||(8315737-8315837)
chr6 (251-350)||(27552343-27552443)
chr6 (272-350)||(3596396-3596475)
chr6 (251-339)||(17887078-17887167)
[»] chr1 (6 HSPs)
chr1 (59-176)||(30647445-30647565)
chr1 (59-176)||(30642631-30642748)
chr1 (251-350)||(26315837-26315937)
chr1 (136-176)||(51866548-51866588)
chr1 (221-350)||(30647189-30647319)
chr1 (234-351)||(43592037-43592155)
[»] scaffold0044 (1 HSPs)
scaffold0044 (251-350)||(45098-45198)
[»] chr5 (7 HSPs)
chr5 (251-350)||(12023113-12023213)
chr5 (251-350)||(37681860-37681960)
chr5 (251-350)||(7099607-7099707)
chr5 (251-350)||(16798493-16798593)
chr5 (234-350)||(10277028-10277145)
chr5 (251-350)||(40367833-40367933)
chr5 (305-350)||(30067058-30067103)
[»] chr3 (5 HSPs)
chr3 (251-350)||(54167577-54167677)
chr3 (251-350)||(21850023-21850123)
chr3 (106-176)||(22931765-22931835)
chr3 (135-176)||(36082722-36082763)
chr3 (14-67)||(1299260-1299312)
[»] scaffold0440 (2 HSPs)
scaffold0440 (251-350)||(7330-7430)
scaffold0440 (251-350)||(2804-2904)
[»] chr2 (4 HSPs)
chr2 (251-350)||(8055216-8055316)
chr2 (251-350)||(36674875-36674975)
chr2 (135-176)||(7468129-7468170)
chr2 (221-350)||(35950641-35950771)
[»] chr7 (3 HSPs)
chr7 (251-347)||(27761224-27761321)
chr7 (251-350)||(7940316-7940416)
chr7 (254-345)||(13828340-13828432)
[»] scaffold0019 (1 HSPs)
scaffold0019 (135-202)||(59575-59642)


Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 44912590 - 44912966
Alignment:
Q  10 gagaagaaagagaatattaattgttgtaatcttatgagttttattaattgtgaaaagtgactacatcatatcttatataagaagcttatttacatcgctt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44912590 gagaagaaagagaatattaattgttgtaatcttatgagttttattaattgtgaaaagtgactacatcatgtcttatataagaagcttatttacatcgctt 44912689  T
Q  110 gtttagtaagctatctaaacaaacataacaaacttagctagattatctaactaacttgtaacaaacttttaaaccccaatatgtataatatataccccaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  44912690 gtttagtaagctatctaaacaaacataacaaacttagctagattacctaactaacttgtaacaaacttttataccccaatatgtataatatatacccgaa 44912789  T
Q  210 cgggtatatagtctaaacttgttcaacctttcaatcttaactgccttagtgaatatgtcaggaagttgcagctcagtagaacaatggaaatctttagagc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44912790 cgggtatatagtctaaacttgttcaacctttcaatcttaactgccttagtgaatatgtcaggaagttgcagctcagtagaacaatggaaatctttagagc 44912889  T
Q  310 ccctttgtttacttgttccctaagaaaatgaaactttgctttaatttgatgatcataaattgtttccccacaagcct 386  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  44912890 ccctttgtttacttattccctaagaaaatgaaactttacttcaatttgatgatcataaattgtttccccacaagcct 44912966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 44913573 - 44913751
Alignment:
Q  10 gagaagaaagagaatattaattgttgtaatcttatgagttttattaattgtgaaaagtgactacatcatatcttatataagaagcttatttacatcgctt 109  Q
    ||||| |||||||  |||||||||||||||||||||||||| |||| ||||||||||||| ||||||||  ||||||||| ||||||||| |||| ||||    
T  44913573 gagaataaagagatgattaattgttgtaatcttatgagtttcattagttgtgaaaagtgattacatcatgccttatataaaaagcttattcacattgctt 44913672  T
Q  110 gtttagtaagctatctaaacaaacataacaaacttagctagattatctaactaacttgtaacaaacttttaaaccccaa 188  Q
    | ||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||| || |||||||    
T  44913673 gcttagtaagctatctaaacaaacataacaaatatagctagattacctaactaacttgtaacaaacttctataccccaa 44913751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 197917 - 198017
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| | ||||| ||| || || ||||| ||||| ||||| ||||||||||||||||||    
T  197917 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatgaacaatctgtagtgctcccttgttcacttgctccctcagaaaatgaaactttgct 198016  T
Q  350 t 350  Q
    |    
T  198017 t 198017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 312754 - 312854
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| | ||||| ||| || || ||||| ||||| ||||| ||||||||||||||||||    
T  312754 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatgaacaatctgtagtgctcccttgttcacttgctccctcagaaaatgaaactttgct 312853  T
Q  350 t 350  Q
    |    
T  312854 t 312854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 350
Target Start/End: Original strand, 30406025 - 30406136
Alignment:
Q  240 tcaatcttaactgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaat 338  Q
    |||||||| | |||||||||||||||||| | ||| |||||||||||||||||||| | |||||  || || || ||||| ||||||||||| |||||||    
T  30406025 tcaatcttcaatgccttagtgaatatgtctgcaagctgcagctcagtagaacaatgaacaatctgcagtgctcccttgttcacttgttcccttagaaaat 30406124  T
Q  339 gaaactttgctt 350  Q
    | ||||||||||    
T  30406125 ggaactttgctt 30406136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 25479862 - 25479794
Alignment:
Q  139 aaacttagctagattatctaactaacttgtaacaaacttttaaaccccaatatgtataatatatacccc 207  Q
    |||||||||||||||  ||||||||||| ||||||||||||| ||||| | | ||||||||||||||||    
T  25479862 aaacttagctagatttcctaactaacttttaacaaacttttatacccctacaagtataatatatacccc 25479794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 6414655 - 6414582
Alignment:
Q  138 caaacttagctagattatctaactaacttgtaacaaacttttaaaccccaatatgtataatatataccccaacg 211  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||| ||||| |   ||||||||||| ||||||||    
T  6414655 caaacttagcttgattacctaactaacttgtgacaaacttttatacccccaagggtataatatattccccaacg 6414582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 43807716 - 43807816
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| | |||||  || || || ||||| ||||| ||||| |||||||| ||||| |||    
T  43807716 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatgaacaatctgaagtgctcccttgttcacttgctccctcagaaaatggaacttggct 43807815  T
Q  350 t 350  Q
    |    
T  43807816 t 43807816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 41949726 - 41949682
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatg 295  Q
    |||||||||||||||||| | ||| |||||||||||||| |||||    
T  41949726 tgccttagtgaatatgtctgcaagctgcagctcagtagagcaatg 41949682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 40414457 - 40414615
Alignment:
Q  28 aattgttgtaatcttatgagtttt-attaattgtgaaaagtgactacatcatatcttatataagaagcttatttacatcgcttgtttagtaagctatcta 126  Q
    ||||||||||| |||| ||||||| |||| | ||||||||||| |||| |||  ||||||||||| |||||||||||| ||||| |||||||||||||||    
T  40414457 aattgttgtaaacttacgagttttcattattagtgaaaagtgattacaacatgccttatataagaggcttatttacattgcttgcttagtaagctatcta 40414556  T
Q  127 aacaaacataacaaacttagctagattatctaactaacttgtaacaaacttttaaaccc 185  Q
    |||||||||||||||||||| ||||||| ||||||||||||||| |||| |||| ||||    
T  40414557 aacaaacataacaaacttagttagattaactaactaacttgtaataaacctttataccc 40414615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 60 - 188
Target Start/End: Original strand, 24412778 - 24412906
Alignment:
Q  60 tgaaaagtgactacatcatatcttatataagaagcttatttacatcgcttgtttagtaagctatctaaacaaacataacaaacttagctagattatctaa 159  Q
    |||||||||| |||| | |  ||||||||||| ||||||| |||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||  |||    
T  24412778 tgaaaagtgattacaacgtgccttatataagaggcttattcacattgcttgcttagtaaactatctaaacaaacataacaaacttagttagattacataa 24412877  T
Q  160 ctaacttgtaacaaacttttaaaccccaa 188  Q
    || |||||||||||||||||| |||||||    
T  24412878 cttacttgtaacaaacttttataccccaa 24412906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 81 - 180
Target Start/End: Original strand, 24412922 - 24413021
Alignment:
Q  81 cttatataagaagcttatttacatcgcttgtttagtaagctatctaaacaaacataacaaacttagctagattatctaactaacttgtaacaaactttta 180  Q
    ||||||||||| ||||||| |||| ||||| |||| || |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  24412922 cttatataagaggcttattcacattgcttgcttagcaaactatctaaccaaacgtaacaaacttagctagattacctaactaacttgtaacaaactttta 24413021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 26905398 - 26905317
Alignment:
Q  135 taacaaacttagctagattatctaactaacttgtaacaaacttttaaaccccaatatgtataatatataccccaacgggtata 217  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||   | ||||||||||||| |||| |||||||    
T  26905398 taacaaacttagctagattttctaactaacttgtaacaaacttttatacccc-ccaagtataatatatactccaatgggtata 26905317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 251 - 344
Target Start/End: Original strand, 8892854 - 8892948
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaact 344  Q
    |||||||||||||||||| | |||||||||||||||||| ||||| | ||||| ||| || || ||||| ||||| ||||| |||||||| ||||    
T  8892854 tgccttagtgaatatgtctgcaagttgcagctcagtagagcaatgaacaatctgtagtgctcccttgttcacttgctccctcagaaaatggaact 8892948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 350
Target Start/End: Original strand, 50628146 - 50628263
Alignment:
Q  234 aacctttcaatcttaactgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaa 332  Q
    ||||| |||| ||| | |||||||||||||||||| | ||| |||||||||||||| ||||| | |||||  || || || ||||| ||||| ||||| |    
T  50628146 aacctgtcaaccttcaatgccttagtgaatatgtctgcaagctgcagctcagtagagcaatgaacaatctacagtgctcccttgttcacttgctccctca 50628245  T
Q  333 gaaaatgaaactttgctt 350  Q
    ||||||||||||| ||||    
T  50628246 gaaaatgaaacttggctt 50628263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 345
Target Start/End: Complemental strand, 31359093 - 31358981
Alignment:
Q  234 aacctttcaatcttaactgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaa 332  Q
    ||||| |||| ||| | ||||||| |||||||||| | ||| |||||||||||||| ||||| | |||||  || || || ||||| ||||| ||||| |    
T  31359093 aacctgtcaaccttcaatgccttaatgaatatgtctgcaagctgcagctcagtagagcaatgaacaatctacagtgctcccttgttcacttgctccctca 31358994  T
Q  333 gaaaatgaaactt 345  Q
    |||||||||||||    
T  31358993 gaaaatgaaactt 31358981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 44151482 - 44151382
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| ||||||| |||||||||||| | |||||  || || || ||||| ||||| ||||| |||||||| ||||| |||    
T  44151482 tgccttagtgaatatgtctgcaagctgcagcttagtagaacaatgaacaatctgaagtgctcccttgttcacttgctccctcagaaaatggaacttggct 44151383  T
Q  350 t 350  Q
    |    
T  44151382 t 44151382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 5437938 - 5437791
Alignment:
Q  29 attgttgtaatcttatgagttttattaattgtgaaaagtgactacatcatatcttatataagaagcttatttacatcgcttgtttagtaagctatctaaa 128  Q
    |||||||||||||  ||||||| |||| ||||||||| ||| |||| |||  ||||||||||| ||||||| |||| ||||| |||||||||||||||||    
T  5437938 attgttgtaatctattgagtttcattagttgtgaaaaatgattacaacatgccttatataagaggcttattcacattgcttgcttagtaagctatctaaa 5437839  T
Q  129 caaacataacaaact-tagctagattatctaactaacttgtaacaaact 176  Q
    |||||||||||||||  |||||| || |||||||||| |||||||||||    
T  5437838 caaacataacaaactcaagctag-ttttctaactaacctgtaacaaact 5437791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 8315737 - 8315837
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| | |||||||||||| ||||| | ||||| ||| || || ||||| ||||| ||||| ||||||||||||||||||    
T  8315737 tgccttagtgaatatgtctgcaagcttcagctcagtagatcaatgaacaatctgtagtgctcccttgttcacttgctccctcagaaaatgaaactttgct 8315836  T
Q  350 t 350  Q
    |    
T  8315837 t 8315837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 27552343 - 27552443
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| |||||||||||||| ||||| | |||||  || || || ||||||||||| ||||| |||||||||||||| |||    
T  27552343 tgccttagtgaatatgtctgcaagctgcagctcagtagagcaatgaacaatctgcagtgctcccttgtttacttgctcccttagaaaatgaaacttggct 27552442  T
Q  350 t 350  Q
    |    
T  27552443 t 27552443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 3596475 - 3596396
Alignment:
Q  272 aagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgctt 350  Q
    |||||||||||||||||||||||||| |||||| |  ||    ||||||||||||||||||||||| |||||||| ||||    
T  3596475 aagttgcagctcagtagaacaatggacaatcttcaatgcttgcttgtttacttgttccctaagaaagtgaaacttagctt 3596396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 339
Target Start/End: Original strand, 17887078 - 17887167
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatg 339  Q
    |||||||||||||||||| | ||| |||||||||||||| ||||| | |||||  || || || ||||||||||| ||||| ||||||||    
T  17887078 tgccttagtgaatatgtctgcaagctgcagctcagtagagcaatgaacaatctgcagtgctcccttgtttacttgctccctcagaaaatg 17887167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 176
Target Start/End: Complemental strand, 30647565 - 30647445
Alignment:
Q  59 gtgaaaagtgactacatcatatcttatataagaagcttatttacatcgcttgtttagtaagctatctaaacaaacataacaaact-tagctagat---ta 154  Q
    ||||||||||| |||| |||  ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||||  |||||| |   ||    
T  30647565 gtgaaaagtgattacaacatgccttatataagaggcttatttacat-gcttggttagtaagctatctaaacaaacataaccaactcaagctagctctcta 30647467  T
Q  155 tctaactaacttgtaacaaact 176  Q
     |||||||||||||||||||||    
T  30647466 actaactaacttgtaacaaact 30647445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 176
Target Start/End: Complemental strand, 30642748 - 30642631
Alignment:
Q  59 gtgaaaagtgactacatcatatcttatataagaagcttatttacatcgcttgtttagtaagctatctaaacaaacataacaaact-tagctagattatct 157  Q
    ||||||||||| |||| |||  ||||||||||| |||||||||| | |||||  |||||| ||||||||||||||||||| ||||  | |||| || |||    
T  30642748 gtgaaaagtgattacagcatgccttatataagaggcttatttaccttgcttgcatagtaaactatctaaacaaacataaccaactcaatctag-ttctct 30642650  T
Q  158 aactaacttgtaacaaact 176  Q
    | |||||||||||||||||    
T  30642649 agctaacttgtaacaaact 30642631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 26315937 - 26315837
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| | |||||  || || || ||||| ||||| ||||| |||||||| ||||| |||    
T  26315937 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatgaacaatctgaagtgctcccttgttcacttgctccctcagaaaatggaacttggct 26315838  T
Q  350 t 350  Q
    |    
T  26315837 t 26315837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 51866548 - 51866588
Alignment:
Q  136 aacaaacttagctagattatctaactaacttgtaacaaact 176  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  51866548 aacaaacttagctagatcatctaactaacttgtaacaaact 51866588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 350
Target Start/End: Complemental strand, 30647319 - 30647189
Alignment:
Q  221 tctaaacttgttcaacctttcaatcttaactgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgttt 319  Q
    ||||| |||||| |||||  ||||||| |  ||||||||||| || |  | ||| ||||  ||||| |||||||||| || ||||||||| |||||| ||    
T  30647319 tctaagcttgttaaacctgacaatcttcatagccttagtgaacatattcgcaagctgcaaatcagtggaacaatggacaacctttagagctcctttggtt 30647220  T
Q  320 acttgttccctaagaaaatgaaactttgctt 350  Q
    |  ||||||||||||||||| ||||||||||    
T  30647219 aactgttccctaagaaaatggaactttgctt 30647189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 351
Target Start/End: Original strand, 43592037 - 43592155
Alignment:
Q  234 aacctttcaatcttaactgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaa 332  Q
    ||||| |||| ||| | |||||||||||||||||| | |||||| ||||||||||| ||||| | |||||  ||||| || ||||| ||||| ||||| |    
T  43592037 aacctgtcaaccttcaatgccttagtgaatatgtctgcaagttgtagctcagtagagcaatgaacaatctacagagctcccttgttcacttggtccctca 43592136  T
Q  333 gaaaatgaaactttgcttt 351  Q
     |||||| ||||| |||||    
T  43592137 taaaatggaacttagcttt 43592155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 45098 - 45198
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| | ||||| ||| || || ||||| ||||| ||||| ||||||||||||||||||    
T  45098 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatgaacaatctgtagtgctcccttgttcacttgctccctcagaaaatgaaactttgct 45197  T
Q  350 t 350  Q
    |    
T  45198 t 45198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 12023213 - 12023113
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| | ||||| ||| || || ||||| ||||| ||||| ||||||||||||||||||    
T  12023213 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatgaacaatctgtagtgctcccttgttcacttgctccctcagaaaatgaaactttgct 12023114  T
Q  350 t 350  Q
    |    
T  12023113 t 12023113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 37681960 - 37681860
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| | ||||| ||| || || ||||| | ||| ||||| ||||||||||||||||||    
T  37681960 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatgaacaatctgtagtgctcccttgttcatttgctccctcagaaaatgaaactttgct 37681861  T
Q  350 t 350  Q
    |    
T  37681860 t 37681860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 7099607 - 7099707
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| | |||||  || || || ||||| ||||| ||||| |||||||| ||||| |||    
T  7099607 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatgaacaatctgaagtgctcccttgttcacttgctccctcagaaaatggaacttggct 7099706  T
Q  350 t 350  Q
    |    
T  7099707 t 7099707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 16798593 - 16798493
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| | |||||  || || || ||||| ||||| ||||| |||||||| ||||| |||    
T  16798593 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatgaacaatctgaagtgctcccttgttcacttgctccctcagaaaatggaacttggct 16798494  T
Q  350 t 350  Q
    |    
T  16798493 t 16798493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 350
Target Start/End: Complemental strand, 10277145 - 10277028
Alignment:
Q  234 aacctttcaatcttaactgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaa 332  Q
    ||||| |||| ||| | |||||||||||||||||| | ||| || ||||||||||| ||||| | |||||  || || || ||||| ||||| ||||| |    
T  10277145 aacctgtcaaccttcaatgccttagtgaatatgtccgcaagctgtagctcagtagagcaatgaacaatctgcagtgctcccttgttcacttgctccctca 10277046  T
Q  333 gaaaatgaaactttgctt 350  Q
    ||||||||||||| ||||    
T  10277045 gaaaatgaaacttggctt 10277028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 40367833 - 40367933
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| ||||||| |||||| ||||| | |||||  || || || ||||| ||||| ||||| |||||||||||||| |||    
T  40367833 tgccttagtgaatatgtctgcaagctgcagcttagtagagcaatgaacaatctgcagtgctcccttgttcacttgctcccttagaaaatgaaacttggct 40367932  T
Q  350 t 350  Q
    |    
T  40367933 t 40367933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 30067103 - 30067058
Alignment:
Q  305 agagcccctttgtttacttgttccctaagaaaatgaaactttgctt 350  Q
    |||||| ||||||| |||||||| || |||||||||||||||||||    
T  30067103 agagcctctttgttcacttgttctctgagaaaatgaaactttgctt 30067058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 54167577 - 54167677
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| | ||||| ||| || || ||||| ||||| ||||| ||||||||||||||||||    
T  54167577 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatgaacaatctgtagtgctcccttgttcacttgctccctcagaaaatgaaactttgct 54167676  T
Q  350 t 350  Q
    |    
T  54167677 t 54167677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 21850123 - 21850023
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| |||||||||||||| ||||| | |||||  || || || ||||| ||||| ||||| ||||||||||||||||||    
T  21850123 tgccttagtgaatatgtctgcaagctgcagctcagtagagcaatgaacaatctgcagtgctcccttgttcacttgctcccttagaaaatgaaactttgct 21850024  T
Q  350 t 350  Q
    |    
T  21850023 t 21850023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 22931765 - 22931835
Alignment:
Q  106 gcttgtttagtaagctatctaaacaaacataacaaacttagctagattatctaactaacttgtaacaaact 176  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||| || | || ||| ||||||||||||||    
T  22931765 gcttgcttagtaagcaatctaaacaaacttaacaaacttagctacatcacctgactcacttgtaacaaact 22931835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 36082763 - 36082722
Alignment:
Q  135 taacaaacttagctagattatctaactaacttgtaacaaact 176  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  36082763 taacaaacttagctagatcacctaactaacttgtaacaaact 36082722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 1299312 - 1299260
Alignment:
Q  14 agaaagagaatattaattgttgtaatcttatgagttttattaattgtgaaaagt 67  Q
    |||||||||| |||| ||||||||||||||||||||| |||| | |||||||||    
T  1299312 agaaagagaagatta-ttgttgtaatcttatgagtttcattagtagtgaaaagt 1299260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 7430 - 7330
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| | |||||||||||||||||| | ||||| ||| || || ||||| ||||| ||||| ||||||||||||||||||    
T  7430 tgccttagtgaatatgtctgcaagctacagctcagtagaacaatgaacaatctgtagtgctcccttgttcacttgctccctcagaaaatgaaactttgct 7331  T
Q  350 t 350  Q
    |    
T  7330 t 7330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 2904 - 2804
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| | |||||||||||||||||| | ||||| ||| || || ||||| ||||| ||||| |||||||| |||||||||    
T  2904 tgccttagtgaatatgtctgcaagcttcagctcagtagaacaatgaacaatctgtagtgctcccttgttcacttgctccctcagaaaatgtaactttgct 2805  T
Q  350 t 350  Q
    |    
T  2804 t 2804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 8055316 - 8055216
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||  |||||||||||||||||||| | ||||| ||| || || ||||| ||||| ||||| ||||||||||||||||||    
T  8055316 tgccttagtgaatatgtctgcaaactgcagctcagtagaacaatgaacaatctgtagtgctcccttgttcacttgctccctcagaaaatgaaactttgct 8055217  T
Q  350 t 350  Q
    |    
T  8055216 t 8055216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 36674975 - 36674875
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| | |||||  || || || ||||| ||||| ||||| |||||||| ||||| |||    
T  36674975 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatgaacaatctgaagtgctcccttgttcacttgctccctcagaaaatggaacttggct 36674876  T
Q  350 t 350  Q
    |    
T  36674875 t 36674875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 7468129 - 7468170
Alignment:
Q  135 taacaaacttagctagattatctaactaacttgtaacaaact 176  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  7468129 taacaaacttagctaggtcatctaactaacttgtaacaaact 7468170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 350
Target Start/End: Original strand, 35950641 - 35950771
Alignment:
Q  221 tctaaacttgttcaacctttcaatcttaactgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgttt 319  Q
    ||||| |||| | ||||| |||| ||| | |||||||||||||||||| | ||| || |||||||| || ||||| | |||||  || || || |||||     
T  35950641 tctaagcttgatgaacctgtcaaccttcaatgccttagtgaatatgtctgcaagctgtagctcagtggagcaatgaacaatctgcagtgctcccttgttc 35950740  T
Q  320 acttgttccctaagaaaatgaaactttgctt 350  Q
    ||||| ||||| |||||||||||||| ||||    
T  35950741 acttgctccctcagaaaatgaaacttggctt 35950771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 347
Target Start/End: Complemental strand, 27761321 - 27761224
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttg 347  Q
    |||||||||||||||||| | ||| |||||||||||||| ||||| | |||||  || || || ||||| ||||| ||||| ||||||||||||||||    
T  27761321 tgccttagtgaatatgtctgcaagctgcagctcagtagagcaatgaacaatctgcagtgctcccttgttcacttgctcccttagaaaatgaaactttg 27761224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 7940316 - 7940416
Alignment:
Q  251 tgccttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactttgct 349  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| | |||||  || || || ||||| ||||| ||||| |||||||| ||||| |||    
T  7940316 tgccttagtgaatatgtctgcaagctgcagctcagtagaacaatgaacaatctgaagtgctcccttgttcacttgctccctcagaaaatggaacttggct 7940415  T
Q  350 t 350  Q
    |    
T  7940416 t 7940416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 13828340 - 13828432
Alignment:
Q  254 cttagtgaatatgtcaggaagttgcagctcagtagaacaatgga-aatctttagagcccctttgtttacttgttccctaagaaaatgaaactt 345  Q
    ||||||||||||||| | ||||||||||||||| || ||||||| |||||  |  || |||||||||||||| ||||| | ||||||||||||    
T  13828340 cttagtgaatatgtctgcaagttgcagctcagtggagcaatggacaatctacaatgcacctttgtttacttgctccctcaaaaaatgaaactt 13828432  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 59575 - 59642
Alignment:
Q  135 taacaaacttagctagattatctaactaacttgtaacaaacttttaaaccccaatatgtataatatat 202  Q
    ||||||||||||| |||||  ||||||||||||||||||| ||||| ||||| | ||||||| |||||    
T  59575 taacaaacttagcaagatttcctaactaacttgtaacaaatttttatacccccacatgtatattatat 59642  T

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