View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7425_low_8 (Length: 403)

Name: NF7425_low_8
Description: NF7425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7425_low_8
NF7425_low_8
[»] chr3 (7 HSPs)
chr3 (1-395)||(43682961-43683355)
chr3 (1-149)||(23048678-23048826)
chr3 (1-149)||(17545074-17545222)
chr3 (1-149)||(50096380-50096529)
chr3 (8-128)||(28717035-28717156)
chr3 (1-128)||(10558308-10558436)
chr3 (8-42)||(53189576-53189610)
[»] chr1 (12 HSPs)
chr1 (17-322)||(28956688-28956984)
chr1 (1-128)||(8434874-8435003)
chr1 (316-395)||(21914528-21914608)
chr1 (1-128)||(25663353-25663481)
chr1 (1-128)||(28142361-28142489)
chr1 (8-128)||(1941461-1941581)
chr1 (1-128)||(14159563-14159691)
chr1 (1-128)||(28139110-28139238)
chr1 (8-42)||(17761669-17761703)
chr1 (8-42)||(45532858-45532892)
chr1 (4-107)||(26639796-26639900)
chr1 (348-395)||(28956630-28956678)
[»] chr7 (10 HSPs)
chr7 (1-263)||(7569935-7570193)
chr7 (1-263)||(7576350-7576608)
chr7 (1-149)||(18970854-18971003)
chr7 (8-128)||(5189968-5190089)
chr7 (1-128)||(44673293-44673421)
chr7 (1-128)||(1633953-1634081)
chr7 (1-128)||(1637198-1637326)
chr7 (27-116)||(18974046-18974136)
chr7 (23-64)||(21659327-21659368)
chr7 (343-380)||(36223167-36223204)
[»] chr2 (12 HSPs)
chr2 (1-162)||(3252010-3252171)
chr2 (8-149)||(16880864-16881006)
chr2 (8-149)||(17038554-17038696)
chr2 (8-128)||(6277433-6277554)
chr2 (1-128)||(35079892-35080020)
chr2 (1-128)||(35076634-35076762)
chr2 (346-388)||(16880612-16880652)
chr2 (346-388)||(17038302-17038342)
chr2 (8-42)||(4697168-4697202)
chr2 (8-42)||(27196161-27196195)
chr2 (8-42)||(27499070-27499104)
chr2 (8-42)||(29445695-29445729)
[»] chr5 (7 HSPs)
chr5 (1-149)||(20473860-20474009)
chr5 (1-149)||(31375321-31375470)
chr5 (1-128)||(43104161-43104289)
chr5 (1-128)||(22035579-22035707)
chr5 (1-128)||(22038805-22038933)
chr5 (12-128)||(36700184-36700301)
chr5 (8-42)||(7289846-7289880)
[»] chr8 (10 HSPs)
chr8 (1-155)||(27805869-27806023)
chr8 (8-128)||(5951846-5951967)
chr8 (9-105)||(12104762-12104859)
chr8 (8-128)||(33383080-33383201)
chr8 (8-121)||(2848094-2848208)
chr8 (1-64)||(8856218-8856281)
chr8 (1-64)||(8857691-8857754)
chr8 (23-116)||(29354012-29354106)
chr8 (8-42)||(33578542-33578576)
chr8 (8-64)||(15928928-15928984)
[»] chr6 (7 HSPs)
chr6 (1-149)||(11184328-11184477)
chr6 (8-128)||(964479-964600)
chr6 (1-128)||(20110286-20110414)
chr6 (8-64)||(27315664-27315720)
chr6 (325-384)||(12986717-12986776)
chr6 (8-42)||(15394426-15394460)
chr6 (137-192)||(34751175-34751231)
[»] chr4 (8 HSPs)
chr4 (1-104)||(34855902-34856005)
chr4 (1-105)||(21614576-21614681)
chr4 (316-388)||(34857130-34857203)
chr4 (8-128)||(54899524-54899645)
chr4 (8-128)||(48961977-48962098)
chr4 (8-42)||(12194270-12194304)
chr4 (12-128)||(12705705-12705822)
chr4 (8-64)||(14617183-14617239)
[»] scaffold0012 (1 HSPs)
scaffold0012 (8-128)||(156818-156939)
[»] scaffold2047 (1 HSPs)
scaffold2047 (8-104)||(868-965)
[»] scaffold0005 (1 HSPs)
scaffold0005 (8-64)||(200138-200194)
[»] scaffold1206 (1 HSPs)
scaffold1206 (72-128)||(1887-1943)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 43683355 - 43682961
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||  |||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||    
T  43683355 ctctaagatcaattatattgggtcaaaattataaaagcattaca--taatttatactgaataaactgaaataacattcataaaaatttagagttacagat 43683258  T
Q  100 tacatgatcatgagctagaacagaatcattaatgatctaattaatagaaaattagctaatcatatccgtgagaataaacaaacaagacaaaaggaaaata 199  Q
    |||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||    
T  43683257 tacatgatcatgagctagaacagaatcatctatgacctaattaatagaaaattagctaatcatagccatgagaataaacaaataagacaaaaggaaaata 43683158  T
Q  200 ctcatgaatttcttagtctcctctcctattgttgttttcccaccgatgtgtgtagctcgttctccacctttttcacagagcatctccaaattgtgattca 299  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  43683157 ctcatgaatttcttagtctcctctcgtgttgttgttttcccaccgatgtgtgtagctcgttctccacctttttcacagagcgtctccaaattgtgatcca 43683058  T
Q  300 gccttgttccccaaaacgtgaatgtccaaaacgtgaataccaggctgttgtgtagcgcccc-cttttttatatggctctggcacttatatattcttc 395  Q
    |||||||||||||||||||||||||||| || |||||||||| | |||||||||||||||| | ||||||||||||||||| |||||||| ||||||    
T  43683057 gccttgttccccaaaacgtgaatgtccagaaagtgaataccatgttgttgtgtagcgcccctcctttttatatggctctggaacttatattttcttc 43682961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 23048826 - 23048678
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaatgaaataacattcataataatttagcgttacatatt 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||    |||||||||||| |||||| || |||||| |||    
T  23048826 ctctaagatcaattatattgggtcagaatcataaaagcattacgcacaatttatactgaataacctgaataacattcatgataattcagagttacagatt 23048727  T
Q  101 acatgatcatgagctagaacagaatcattaatgatctaattaatagaaa 149  Q
    ||||  ||||||||||||||| ||||||  |||| ||||| ||||||||    
T  23048726 acatagtcatgagctagaacaaaatcatctatgacctaatcaatagaaa 23048678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 17545074 - 17545222
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaatgaaataacattcataataatttagcgttacatatt 100  Q
    |||||| |||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| |  |||||| |||||||||||| || | |||| |||    
T  17545074 ctctaaaatcaattatattgggtcataatcataaaagcattacacacaatttatactgaataactagaataactttcataataattcagagctacagatt 17545173  T
Q  101 acatgatcatgagctagaacagaatcattaatgatctaattaatagaaa 149  Q
    | ||| | | ||||||||||||||||||  |||| ||||| ||| ||||    
T  17545174 aaatggttaagagctagaacagaatcatatatgacctaatcaatggaaa 17545222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 50096529 - 50096380
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| || ||||||||||  ||||||||||||||||||||||   ||||||||| ||||||| |  |||||| |||||||||||| || | |||| ||    
T  50096529 ctctaatattaattatattgagtcagaatcataaaagcattacatgcaatttataccgaataaactagaataactttcataataattaagagctacagat 50096430  T
Q  100 tacatgatcatgagctagaacagaatcattaatgatctaattaatagaaa 149  Q
    ||| || |||||||||| |||||||||||  |||| ||||| ||| ||||    
T  50096429 tacttggtcatgagctataacagaatcatctatgacctaatcaatggaaa 50096380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 28717035 - 28717156
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatga 106  Q
    |||||||||||||| | ||||||||||||||||||     |||||||||| |||||| |  ||||||||||||||  |||||| |||| |  |||||       
T  28717035 atcaattatattgggttagaatcataaaagcattaagagaaatttatactaaataaactagaataacattcataaagatttagagttataggttacactg 28717134  T
Q  107 tcatgagctagaacagaatcat 128  Q
    |||| |||||||||||||||||    
T  28717135 tcataagctagaacagaatcat 28717156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 10558308 - 10558436
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||||||||||||| ||| |||||||||||| |||   | ||||||||||||||||| |  |||  |||||||||  ||| || ||| ||  |    
T  10558308 ctctaaaatcaattatattgggtcataatcataaaagctttaagaacaatttatactgaataaactagaatggcattcataaagattaagagttgcaggt 10558407  T
Q  100 tacatgatcatgagctagaacagaatcat 128  Q
    ||||| | |||||||||||||| ||||||    
T  10558408 tacataaacatgagctagaacaaaatcat 10558436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 53189610 - 53189576
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcatta 42  Q
    |||||||||||||| ||||||||||||||||||||    
T  53189610 atcaattatattgggtcagaatcataaaagcatta 53189576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 28956984 - 28956688
Alignment:
Q  17 attggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatgatcatgagct 115  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||  ||||| ||||||||||||||||||    
T  28956984 attgggtcaaaatcataaaagcattacacataatttatactgaataaactgaaataacattcttaataattcagaattacagattacatgatcatgagct 28956885  T
Q  116 agaacagaatcattaatgatctaattaatagaaaattagctaatcatatccgtgagaataaacaaacaagacaaaaggaaaatactcatgaatttcttag 215  Q
    |||||||||||||  |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28956884 agaacagaatcatctatgacctaattaatagaaaattagctaatcatatccatgagaataaacaaacaagacaaaaggaaaatactcatgaatttcttag 28956785  T
Q  216 tctcctctcctattgttgttttcccaccgatgtgtgtagctcgttctccacctttttcacagagcatctccaaattgtgattcagccttgttccccaaaa 315  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||          ||||||||| ||||| || |||||||||||||||    
T  28956784 tctcctctcctgttgttgttttcccaccgatgtatgtagctcgttttccacctttt----------tctccaaatagtgatccaaccttgttccccaaaa 28956695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 8435003 - 8434874
Alignment:
Q  1 ctctaagatcaattatattgga-tcagaatcataaaagcattacacataatttatactgaataaatga-aataacattcataataatttagcgttacata 98  Q
    |||||||||||||||||||||  |||||||||||||||||||||||  ||| |||||||||||||  | |||||| |||||||||||| || | |||| |    
T  8435003 ctctaagatcaattatattggggtcagaatcataaaagcattacacgcaatctatactgaataaactataataactttcataataattcagagctacaca 8434904  T
Q  99 ttacatgatcatgagctagaacagaatcat 128  Q
    ||||||| |||||||||||||||| |||||    
T  8434903 ttacatggtcatgagctagaacaggatcat 8434874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 395
Target Start/End: Original strand, 21914528 - 21914608
Alignment:
Q  316 cgtgaatgtccaaaacgtgaataccaggctgttgtgtagcgccccct-tttttatatggctctggcacttatatattcttc 395  Q
    |||||||||| | |||||||| |||||||||||||| ||| ||||   |||||||||||||||||||||||||| ||||||    
T  21914528 cgtgaatgtctagaacgtgaaaaccaggctgttgtgaagcacccctactttttatatggctctggcacttatattttcttc 21914608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 25663353 - 25663481
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||| ||||||||| |||||| |||||||||||||   | ||||||||||||||||| |  ||| ||||||||||  ||| || ||||||| |    
T  25663353 ctctaaaatcatttatattgggtcagaaacataaaagcattaagaacaatttatactgaataaactagaatgacattcataaagattaagagttacatgt 25663452  T
Q  100 tacatgatcatgagctagaacagaatcat 128  Q
    ||||| ||  |||||||||||| ||||||    
T  25663453 tacattatactgagctagaacaaaatcat 25663481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 28142361 - 28142489
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||||||||||||| |||||||||||||||| |||   | ||||||||||||||||| |  ||| ||||||||||  ||| || ||| ||  |    
T  28142361 ctctaaaatcaattatattgggtcagaatcataaaagctttaagaacaatttatactgaataaactagaatgacattcataaagattaagagttgcaggt 28142460  T
Q  100 tacatgatcatgagctagaacagaatcat 128  Q
    ||||| | |||||||||||||| ||||||    
T  28142461 tacataaacatgagctagaacaaaatcat 28142489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 1941581 - 1941461
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaatga-aataacattcataataatttagcgttacatattacatga 106  Q
    |||||||||||||| || |||||||||| ||||||   |||||||||||||||||||  | ||| ||||||||||  ||| || ||||||  |||||| |    
T  1941581 atcaattatattgggtccgaatcataaa-gcattaagaataatttatactgaataaactagaatgacattcataaagattaagagttacaagttacataa 1941483  T
Q  107 tcatgagctagaacagaatcat 128  Q
     |||||||||||||| ||||||    
T  1941482 acatgagctagaacaaaatcat 1941461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 14159563 - 14159691
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||| ||||||||| |||||||||||||||||||    | ||||||||||||||||| |  |||  |||||||||  ||| || ||||||  |    
T  14159563 ctctaaaatcagttatattgggtcagaatcataaaagcattgagaacaatttatactgaataaactagaatggcattcataaagattaagagttacaggt 14159662  T
Q  100 tacatgatcatgagctagaacagaatcat 128  Q
    ||||| | |||||||||||||| ||||||    
T  14159663 tacataaacatgagctagaacaaaatcat 14159691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 28139110 - 28139238
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||||||||||||| |||||||||||||||| |||   | ||||||||||||||||| |  |||  |||||||||  ||| || ||| ||  |    
T  28139110 ctctaaaatcaattatattgggtcagaatcataaaagctttaagaacaatttatactgaataaactagaatggcattcataaagattaagagttgcaggt 28139209  T
Q  100 tacatgatcatgagctagaacagaatcat 128  Q
    ||||| | |||||||||||||| ||||||    
T  28139210 tacataaacatgagctagaacaaaatcat 28139238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 17761703 - 17761669
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcatta 42  Q
    |||||||||||||| ||||||||||||||||||||    
T  17761703 atcaattatattgggtcagaatcataaaagcatta 17761669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 45532858 - 45532892
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcatta 42  Q
    |||||||||||||| ||||||||||||||||||||    
T  45532858 atcaattatattgggtcagaatcataaaagcatta 45532892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 26639796 - 26639900
Alignment:
Q  4 taagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataa-tttagcgttacatatta 101  Q
    |||| |||||| |||||| ||||||||||||||||||||  || |||||||||  |||||| |  ||||  | ||||||||| ||||| |||||||||||    
T  26639796 taagttcaattgtattggttcagaatcataaaagcattaggcacaatttatac-aaataaactagaatagtaatcataataattttagagttacatatta 26639894  T
Q  102 catgat 107  Q
    ||||||    
T  26639895 catgat 26639900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 395
Target Start/End: Complemental strand, 28956678 - 28956630
Alignment:
Q  348 tgtgtagcgccccct-tttttatatggctctggcacttatatattcttc 395  Q
    ||||||||||||| | ||||||||||||||| |||||||||| ||||||    
T  28956678 tgtgtagcgccccttctttttatatggctctcgcacttatattttcttc 28956630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 7570193 - 7569935
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  7570193 ctctaagatcaattatattgggtcagaatcataaaagcattacacataatttatactgaataaaatgaaataacattcataataatttagagttacatat 7570094  T
Q  100 tacatgatcatgagctagaacagaatcattaatgatctaattaatagaaaattagctaatcatatccgtgagaataaacaaacaagacaaaaggaaaata 199  Q
    |||||||||||||||||||||||||||||  |||| ||||| |||||||||||| |||||||||||  | ||||||||||||||||||||||||||||||    
T  7570093 tacatgatcatgagctagaacagaatcatctatgacctaatcaatagaaaattaactaatcatatctataagaataaacaaacaagacaaaaggaaaata 7569994  T
Q  200 ctcatgaatttcttagtctcctctcctattgttgttttcccaccgatgtgtgtagctcgttctc 263  Q
    |||||||||||||| |     |||||| ||||||||||||||| |||||||||| |||||||||    
T  7569993 ctcatgaatttctttg-----tctcctgttgttgttttcccactgatgtgtgtaactcgttctc 7569935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 7576608 - 7576350
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  7576608 ctctaagatcaattatattgggtcagaatcataaaagcattacacataatttatactgaataaaatgaaataacattcataataatttagagttacatat 7576509  T
Q  100 tacatgatcatgagctagaacagaatcattaatgatctaattaatagaaaattagctaatcatatccgtgagaataaacaaacaagacaaaaggaaaata 199  Q
    |||||||||||||||||||||||||||||  |||| ||||| |||||||||||| |||||||||||  | ||||||||||||||||||||||||||||||    
T  7576508 tacatgatcatgagctagaacagaatcatctatgacctaatcaatagaaaattaactaatcatatctataagaataaacaaacaagacaaaaggaaaata 7576409  T
Q  200 ctcatgaatttcttagtctcctctcctattgttgttttcccaccgatgtgtgtagctcgttctc 263  Q
    |||||||||||||| |     |||||| ||||||||||||||| |||||||||| |||||||||    
T  7576408 ctcatgaatttctttg-----tctcctgttgttgttttcccactgatgtgtgtaactcgttctc 7576350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 18970854 - 18971003
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| |  |||||| |||||||| ||| || | |||| ||    
T  18970854 ctctaatatcaattatattgggtcagaatcataaaagcattacacacaatttatattgaataaactagaataactttcataatgattcagagctacagat 18970953  T
Q  100 tacatgatcatgagctagaacagaatcattaatgatctaattaatagaaa 149  Q
    |||||| ||||||| ||||||||||||||  |||| ||||| ||| ||||    
T  18970954 tacatggtcatgagttagaacagaatcatctatgacctaatcaatggaaa 18971003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 5189968 - 5190089
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatga 106  Q
    |||||||||||||| ||||||||||||||||||||   | ||||||||||||||||| |  ||| ||||||||||  ||| || ||||||  |||||| |    
T  5189968 atcaattatattgggtcagaatcataaaagcattaagaacaatttatactgaataaactagaatgacattcataaagattaagagttacaggttacataa 5190067  T
Q  107 tcatgagctagaacagaatcat 128  Q
     |||||||||||||| ||||||    
T  5190068 acatgagctagaacaaaatcat 5190089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 44673293 - 44673421
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||||||||||||| |||||||||||||||| |||   | ||||||||||||||||| |  ||| ||||||||||  ||| || ||| ||  |    
T  44673293 ctctaaaatcaattatattgggtcagaatcataaaagctttaagaacaatttatactgaataaactagaatgacattcataaagattaagagttgcaggt 44673392  T
Q  100 tacatgatcatgagctagaacagaatcat 128  Q
    ||||| | |||||||||||||| ||||||    
T  44673393 tacataaacatgagctagaacaaaatcat 44673421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 1633953 - 1634081
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||||||||||||| |||||||||||||||| |||   | ||||||||||||||||| |  |||  |||||||||  ||| || ||| ||  |    
T  1633953 ctctaaaatcaattatattgggtcagaatcataaaagctttaagaacaatttatactgaataaactagaatggcattcataaagattaagagttgcaggt 1634052  T
Q  100 tacatgatcatgagctagaacagaatcat 128  Q
    ||||| | |||||||||||||| ||||||    
T  1634053 tacataaacatgagctagaacaaaatcat 1634081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 1637198 - 1637326
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||||||||||||| |||||||||||||||| |||   | ||||||||||||||||| |  |||  |||||||||  ||| || ||| ||  |    
T  1637198 ctctaaaatcaattatattgggtcagaatcataaaagctttaagaacaatttatactgaataaactagaatggcattcataaagattaagagttgcaggt 1637297  T
Q  100 tacatgatcatgagctagaacagaatcat 128  Q
    ||||| | |||||||||||||| ||||||    
T  1637298 tacataaacatgagctagaacaaaatcat 1637326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 18974046 - 18974136
Alignment:
Q  27 aatcataaaagcattacacataatttatactgaataaatgaa-ataacattcataataatttagcgttacatattacatgatcatgagcta 116  Q
    ||||||||||||||||| || |||||||| | ||||||  |  ||||| |||||||||||| || | |||| |||||||| ||||||||||    
T  18974046 aatcataaaagcattacgcacaatttatattaaataaactaggataactttcataataattcagagctacagattacatggtcatgagcta 18974136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 21659327 - 21659368
Alignment:
Q  23 tcagaatcataaaagcattacacataatttatactgaataaa 64  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  21659327 tcagaatcataaaagcattaagaataatttatactgaataaa 21659368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 380
Target Start/End: Original strand, 36223167 - 36223204
Alignment:
Q  343 gctgttgtgtagcgcccccttttttatatggctctggc 380  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  36223167 gctgttgtgtagcgcccctctttttatatggctctggc 36223204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 3252171 - 3252010
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataa-atgaaataacattcataataatttagcgttacatat 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||  || |||||||||||| |||||| || |||||| ||    
T  3252171 ctctaagatcaattatattggatcagaatcataaaagcattacgcacaatttatacttaataacctggaataacattcatgataattcagagttacagat 3252072  T
Q  100 tacatgatcatgagctagaacagaatcattaatgatctaattaatagaaaattagctaatcat 162  Q
    |||||  ||||||||||||||| ||| ||  |||| ||||| ||| |||||||||| ||||||    
T  3252071 tacatagtcatgagctagaacaaaattatctatgacctaatcaat-gaaaattagccaatcat 3252010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 16881006 - 16880864
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatga 106  Q
    |||||||||||||| ||||||||||||||||||||   |  |||||||||||||||| |  ||| ||||||||||  ||| || ||||||  ||| ||      
T  16881006 atcaattatattgggtcagaatcataaaagcattaagaacgatttatactgaataaactagaatgacattcataaagattaagagttacaggttagatag 16880907  T
Q  107 tcatgagctagaacagaatcattaatgatctaattaatagaaa 149  Q
    ||||||||||||||| ||||||  |||||||||| ||| ||||    
T  16880906 tcatgagctagaacaaaatcatctatgatctaatcaatggaaa 16880864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 17038696 - 17038554
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatga 106  Q
    |||||||||||||| ||||||||||||||||||||   |  |||||||||||||||| |  ||| ||||||||||  ||| || ||||||  ||| ||      
T  17038696 atcaattatattgggtcagaatcataaaagcattaagaacgatttatactgaataaactagaatgacattcataaagattaagagttacaggttagatag 17038597  T
Q  107 tcatgagctagaacagaatcattaatgatctaattaatagaaa 149  Q
    ||||||||||||||| ||||||  |||||||||| ||| ||||    
T  17038596 tcatgagctagaacaaaatcatctatgatctaatcaatggaaa 17038554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 6277433 - 6277554
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatga 106  Q
    |||||||||||||| ||||||||||||||||||||   | ||||||||||||||||| |  ||| ||||||||||  ||| || |||| |  |||||| |    
T  6277433 atcaattatattgggtcagaatcataaaagcattaagaagaatttatactgaataaactagaatgacattcataaagattaagagttataggttacataa 6277532  T
Q  107 tcatgagctagaacagaatcat 128  Q
     |||||||||||||| ||||||    
T  6277533 acatgagctagaacaaaatcat 6277554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 35080020 - 35079892
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||||||||||||| |||||||||||||||| |||   | ||||||||||||||||| |  |||  |||||||||  ||| || ||| ||  |    
T  35080020 ctctaaaatcaattatattgggtcagaatcataaaagctttaagaacaatttatactgaataaactagaatggcattcataaagattaagagttgcaggt 35079921  T
Q  100 tacatgatcatgagctagaacagaatcat 128  Q
    ||||| | |||||||||||||| ||||||    
T  35079920 tacataaacatgagctagaacaaaatcat 35079892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 35076762 - 35076634
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||||||||||||| |||||||||||||||  |||   | ||||||||||||||||| |  |||  |||||||||  ||| || ||| ||  |    
T  35076762 ctctaaaatcaattatattgggtcagaatcataaaagttttaagaacaatttatactgaataaactagaatggcattcataaagattaagagttgcaggt 35076663  T
Q  100 tacatgatcatgagctagaacagaatcat 128  Q
    ||||| | |||||||||||||| ||||||    
T  35076662 tacataaacatgagctagaacaaaatcat 35076634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 16880652 - 16880612
Alignment:
Q  346 gttgtgtagcgcccccttttttatatggctctggcacttatat 388  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  16880652 gttgtgtagcgcccc--tttttatatggctctggcacttatat 16880612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 17038342 - 17038302
Alignment:
Q  346 gttgtgtagcgcccccttttttatatggctctggcacttatat 388  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  17038342 gttgtgtagcgcccc--tttttatatggctctggcacttatat 17038302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 4697168 - 4697202
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcatta 42  Q
    |||||||||||||| ||||||||||||||||||||    
T  4697168 atcaattatattgggtcagaatcataaaagcatta 4697202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 27196161 - 27196195
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcatta 42  Q
    |||||||||||||| ||||||||||||||||||||    
T  27196161 atcaattatattgggtcagaatcataaaagcatta 27196195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 27499104 - 27499070
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcatta 42  Q
    |||||||||||||| ||||||||||||||||||||    
T  27499104 atcaattatattgggtcagaatcataaaagcatta 27499070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 29445695 - 29445729
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcatta 42  Q
    |||||||||||||| ||||||||||||||||||||    
T  29445695 atcaattatattgggtcagaatcataaaagcatta 29445729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 20473860 - 20474009
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||||| |||||||||||  |||||||||||||||||||||||| ||||||||||||||||| |  |||||| |||||||||||| || | |||| ||    
T  20473860 ctctaagaacaattatattgagtcagaatcataaaagcattacacacaatttatactgaataaactagaataactttcataataattcagagctacagat 20473959  T
Q  100 tacatgatcatgagctagaacagaatcattaatgatctaattaatagaaa 149  Q
    ||| || ||||||||||||||||||||||  |||| ||||| ||||||||    
T  20473960 tacttggtcatgagctagaacagaatcatctatgacctaatcaatagaaa 20474009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 31375470 - 31375321
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataa-atgaaataacattcataataatttagcgttacatat 99  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| || |||||||||| |||||  |  |||||| |||||||||||| || | |||| ||    
T  31375470 ctctaagatcaattataatgggtcagaatcataaaagcattacgcacaatttatactaaataacctagaataactttcataataattcagagctacagat 31375371  T
Q  100 tacatgatcatgagctagaacagaatcattaatgatctaattaatagaaa 149  Q
    |||||| ||||||||||||||||||||||  |||| ||||| ||| ||||    
T  31375370 tacatggtcatgagctagaacagaatcatctatgacctaatcaatggaaa 31375321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 43104161 - 43104289
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||||||||||||| ||| ||||||||||||||||   | ||||||||||||||||| |  ||| ||||||||||  ||| || ||||||  |    
T  43104161 ctctaaaatcaattatattgggtcaaaatcataaaagcattaagaacaatttatactgaataaactagaatgacattcataaagattaagagttacaggt 43104260  T
Q  100 tacatgatcatgagctagaacagaatcat 128  Q
    ||||| | |||||||||||||| ||||||    
T  43104261 tacataaacatgagctagaacaaaatcat 43104289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 22035707 - 22035579
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||||||||||||| |||||||||||||||| |||   | ||||||||||||||||| |  |||  |||||||||  ||| || ||| ||  |    
T  22035707 ctctaaaatcaattatattgggtcagaatcataaaagctttaagaacaatttatactgaataaactagaatggcattcataaagattaagagttgcaggt 22035608  T
Q  100 tacatgatcatgagctagaacagaatcat 128  Q
    ||||| | |||||||||||||| ||||||    
T  22035607 tacataaacatgagctagaacaaaatcat 22035579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 22038933 - 22038805
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||||||||||||| |||||||||||||||| |||   | ||||||||||||||||| |  |||  |||||||||  ||| || ||| ||  |    
T  22038933 ctctaaaatcaattatattgggtcagaatcataaaagctttaagaacaatttatactgaataaactagaatggcattcataaagattaagagttgcaggt 22038834  T
Q  100 tacatgatcatgagctagaacagaatcat 128  Q
    ||||| | |||||||||||||| ||||||    
T  22038833 tacataaacatgagctagaacaaaatcat 22038805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 36700301 - 36700184
Alignment:
Q  12 attatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatgatcat 110  Q
    |||||||||| ||||||| ||||||||||||   |  |||||||||||||||| |  ||| ||||||||||  ||| || ||||||  |||||| | |||    
T  36700301 attatattgggtcagaattataaaagcattaagaacgatttatactgaataaactagaatgacattcataaatattaagagttacaggttacataaacat 36700202  T
Q  111 gagctagaacagaatcat 128  Q
    ||||||||||| ||||||    
T  36700201 gagctagaacaaaatcat 36700184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 7289880 - 7289846
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcatta 42  Q
    |||||||||||||| ||||||||||||||||||||    
T  7289880 atcaattatattgggtcagaatcataaaagcatta 7289846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 27805869 - 27806023
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataa-atgaaataacattcataataatttagcgttacatat 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||  |  |||||||||||| |||||| || |||| | ||    
T  27805869 ctctaagatcaattatattggatcagaatcataaaagcattacgcacaatttatactgaataacctagaataacattcatgataattcagagttatagat 27805968  T
Q  100 tacatgatcatgagctagaacagaatcattaatgatctaattaatagaaaattagc 155  Q
    ||||| |||||||||||||| | ||||||  |||| ||||| ||| ||||||||||    
T  27805969 tacataatcatgagctagaataaaatcatgtatgacctaatcaat-gaaaattagc 27806023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 5951967 - 5951846
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatga 106  Q
    |||||||||||||| ||||||||||||||||||||   | ||||||||||||||||| |  ||||||||||||||  ||| || |||| |  |||||| |    
T  5951967 atcaattatattgggtcagaatcataaaagcattaagaacaatttatactgaataaactagaataacattcataaagattaagagttaaaggttacataa 5951868  T
Q  107 tcatgagctagaacagaatcat 128  Q
     |||||||||||||| ||||||    
T  5951867 acatgagctagaacaaaatcat 5951846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 12104762 - 12104859
Alignment:
Q  9 tcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatg 105  Q
    ||||||||||||| ||||||| ||||||| ||||| || |||||||| |||||||| |  ||||||| ||||||||||| || |||||| ||||||||    
T  12104762 tcaattatattgggtcagaattataaaaggattacgcacaatttatattgaataaactagaataacaatcataataattcagagttacaaattacatg 12104859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 33383201 - 33383080
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatga 106  Q
    |||||||||||||| ||||||||||||||||||||   | ||||||||||||||||| |  ||| ||||||||||  ||| || |||| |  |||||| |    
T  33383201 atcaattatattgggtcagaatcataaaagcattaagaacaatttatactgaataaactagaatgacattcataaagattaagagttataggttacataa 33383102  T
Q  107 tcatgagctagaacagaatcat 128  Q
     |||||||||||||| ||||||    
T  33383101 acatgagctagaacaaaatcat 33383080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 2848094 - 2848208
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatga 106  Q
    |||||||||||||| ||||||||||||||||||||   | ||||||||||||||||| |  |||  |||||||||  |||||| |||| |  |||||| |    
T  2848094 atcaattatattgggtcagaatcataaaagcattaagaacaatttatactgaataaactagaatttcattcataaagatttagagttataggttacataa 2848193  T
Q  107 tcatgagctagaaca 121  Q
     ||||||||||||||    
T  2848194 acatgagctagaaca 2848208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8856218 - 8856281
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa 64  Q
    ||||||| || |||||||||| ||| ||||||||||||||||  || | |||||||||||||||    
T  8856218 ctctaagttcgattatattgggtcataatcataaaagcattatgcacagtttatactgaataaa 8856281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8857691 - 8857754
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa 64  Q
    ||||||| || |||||||||| ||| ||||||||||||||||  || | |||||||||||||||    
T  8857691 ctctaagttcgattatattgggtcataatcataaaagcattatgcacagtttatactgaataaa 8857754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 29354106 - 29354012
Alignment:
Q  23 tcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatgatcatgagcta 116  Q
    ||||||||||||||||||||   | ||||||||||||||||| |  ||| ||||||||||  ||| || ||||||| |||||| | |||||||||    
T  29354106 tcagaatcataaaagcattaacaacaatttatactgaataaactagaatgacattcataaagattaagagttacatgttacataaacatgagcta 29354012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 33578542 - 33578576
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcatta 42  Q
    |||||||||||||| ||||||||||||||||||||    
T  33578542 atcaattatattgggtcagaatcataaaagcatta 33578576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 15928928 - 15928984
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa 64  Q
    |||| ||||||| | |||||||||||||||| ||| | |||||||||| ||||||||    
T  15928928 atcatttatattagctcagaatcataaaagctttaaagataatttataatgaataaa 15928984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 11184328 - 11184477
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||||||||||||  |||||||||||||||||||||||| ||||||||| ||||||| |  |||||| |||||||||||| || | |||| ||    
T  11184328 ctctaatatcaattatattgagtcagaatcataaaagcattacacacaatttataccgaataaactagaataactttcataataattcagagctacagat 11184427  T
Q  100 tacatgatcatgagctagaacagaatcattaatgatctaattaatagaaa 149  Q
    ||| || ||||||||||||||||||||||  |||| ||||| ||| ||||    
T  11184428 tacttggtcatgagctagaacagaatcatctatgacctaatcaatggaaa 11184477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 964600 - 964479
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatga 106  Q
    |||||||||||||| ||||||||||||||||||||   | ||||||||||||||||| |  |||| |||||||||  ||| || ||||||  |||||| |    
T  964600 atcaattatattgggtcagaatcataaaagcattaagaacaatttatactgaataaactagaatagcattcataaagattaagagttacaggttacataa 964501  T
Q  107 tcatgagctagaacagaatcat 128  Q
     |||||||||||||| ||||||    
T  964500 acatgagctagaacaaaatcat 964479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 20110286 - 20110414
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||| |||| ||||||||| | ||||||||||||||||||   | ||||||||||||||||| |  ||| ||||||||||  ||| || ||||||  |    
T  20110286 ctctaaaatcatttatattgggttagaatcataaaagcattaagaacaatttatactgaataaactagaatgacattcataaagattaagagttacaggt 20110385  T
Q  100 tacatgatcatgagctagaacagaatcat 128  Q
    ||||| | |||||| ||||||| ||||||    
T  20110386 tacataaacatgagatagaacaaaatcat 20110414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 27315720 - 27315664
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa 64  Q
    |||||||||||||| |||||||||||||||||||| | |  ||||||||||||||||    
T  27315720 atcaattatattgggtcagaatcataaaagcattaaaaacgatttatactgaataaa 27315664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 12986717 - 12986776
Alignment:
Q  325 ccaaaacgtgaataccaggctgttgtgtagcgcccccttttttatatggctctggcactt 384  Q
    |||||||||||||  |  ||||||||||||| ||||  ||||||||||||||||||||||    
T  12986717 ccaaaacgtgaatgtcctgctgttgtgtagcacccctctttttatatggctctggcactt 12986776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 15394426 - 15394460
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcatta 42  Q
    |||||||||||||| ||||||||||||||||||||    
T  15394426 atcaattatattgggtcagaatcataaaagcatta 15394460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 34751231 - 34751175
Alignment:
Q  137 taattaatagaaaattagctaatcatatccgtgagaat-aaacaaacaagacaaaag 192  Q
    ||||||||| |||| ||||||||||||| | ||||||| |||||| |||||||||||    
T  34751231 taattaatataaaactagctaatcatattcatgagaataaaacaatcaagacaaaag 34751175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 34855902 - 34856005
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    |||||||||||||| |||||| || |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||| || |||||||||    
T  34855902 ctctaagatcaattttattgggtc-gaatcataaaagcattacgcataatttatactgaataaactgaaataacattcatgataattcagagttacatat 34856000  T
Q  100 tacat 104  Q
    |||||    
T  34856001 tacat 34856005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 21614576 - 21614681
Alignment:
Q  1 ctctaagatcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatat 99  Q
    ||||||| |||||||||| || |||||||||||||| ||| || || ||||||||||||||||| |  ||||||| ||||||||||| || |||||||||    
T  21614576 ctctaagctcaattatatcgggtcagaatcataaaatcatcacgcacaatttatactgaataaactagaataacaatcataataattcagagttacatat 21614675  T
Q  100 tacatg 105  Q
    ||||||    
T  21614676 tacatg 21614681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 388
Target Start/End: Original strand, 34857130 - 34857203
Alignment:
Q  316 cgtgaatgtccaaaacgtgaataccaggctgttgtgtagcgcccc-cttttttatatggctctggcacttatat 388  Q
    ||||||||| || |||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||    
T  34857130 cgtgaatgtacagaacgtgaataccaggctgttatgtagcgcccctcctttttatatggctctggcacttatat 34857203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 54899645 - 54899524
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatga 106  Q
    |||||||||||||| ||||||||||||||||||||   |  |||||||||||||||| |  ||| ||||||||||  ||| || ||||||  ||||||      
T  54899645 atcaattatattgggtcagaatcataaaagcattaagaaccatttatactgaataaactagaatgacattcataaagattaagagttacaggttacatat 54899546  T
Q  107 tcatgagctagaacagaatcat 128  Q
     |||||||||||||||||||||    
T  54899545 acatgagctagaacagaatcat 54899524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 48961977 - 48962098
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatga 106  Q
    |||||||||||||| ||||||||||||||||||||   | |||||||||| |||||| |  |||  |||||||||  ||| || ||||||  |||||| |    
T  48961977 atcaattatattgggtcagaatcataaaagcattaagaacaatttatacttaataaactagaatggcattcataaagattaagagttacaggttacataa 48962076  T
Q  107 tcatgagctagaacagaatcat 128  Q
     |||||||||||||| ||||||    
T  48962077 acatgagctagaacaaaatcat 48962098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 12194304 - 12194270
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcatta 42  Q
    |||||||||||||| ||||||||||||||||||||    
T  12194304 atcaattatattgggtcagaatcataaaagcatta 12194270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 12705822 - 12705705
Alignment:
Q  12 attatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatgatcat 110  Q
    |||||||||| ||||||||||||||||||||   ||| |||||| |||||||| |  |||  |||||||||  ||| || ||||||  |||||| | |||    
T  12705822 attatattgggtcagaatcataaaagcattaagaatagtttataatgaataaactagaatggcattcataaagattaagagttacaagttacataaacat 12705723  T
Q  111 gagctagaacagaatcat 128  Q
    ||| ||||||| ||||||    
T  12705722 gagttagaacaaaatcat 12705705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 14617239 - 14617183
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacat-aatttatactgaataaa 64  Q
    |||||||||||||| | |||||||||||||||||| | || |||||||||||||||||    
T  14617239 atcaattatattgggttagaatcataaaagcatta-atatcaatttatactgaataaa 14617183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 156939 - 156818
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacatga 106  Q
    |||| ||||||||| ||||||||||||||||||||   | ||||||||||||||||| |  ||| ||||||||||| ||| || |||||   |||| | |    
T  156939 atcagttatattgggtcagaatcataaaagcattaacaacaatttatactgaataaactagaatgacattcataatgattaagagttactagttacgtaa 156840  T
Q  107 tcatgagctagaacagaatcat 128  Q
     ||||||||| |||||||||||    
T  156839 acatgagctaaaacagaatcat 156818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2047
Description:

Target: scaffold2047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 965 - 868
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacataatttatactgaataaa-tgaaataacattcataataatttagcgttacatattacat 104  Q
    |||| ||||||||| ||||||||||||||||||||   |  |||||||||||||||| |  ||| ||||||||||  ||| || ||||||| ||||||    
T  965 atcagttatattgggtcagaatcataaaagcattaagaacgatttatactgaataaactagaatgacattcataaagattaagagttacatgttacat 868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 200138 - 200194
Alignment:
Q  8 atcaattatattggatcagaatcataaaagcattacacat-aatttatactgaataaa 64  Q
    |||||||||||||| | |||||||||||||||||| | || |||||||||||||||||    
T  200138 atcaattatattgggttagaatcataaaagcatta-atatcaatttatactgaataaa 200194  T

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Target: scaffold1206 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1206
Description:

Target: scaffold1206; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 1943 - 1887
Alignment:
Q  72 acattcataataatttagcgttacatattacatgatcatgagctagaacagaatcat 128  Q
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T  1943 acattcataaatatttagagttacatgttacataaacatgagctagaacaaaatcat 1887  T

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