View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7426_high_2 (Length: 485)
Name: NF7426_high_2
Description: NF7426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7426_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Original strand, 6117354 - 6117806
Alignment:
| Q |
19 |
ctaagattaagatcaatgtaaacttataccctttaaaccatgaagtattccgttggattcaaaaccatcttctcaccctaaatatttttcatatgataaa |
118 |
Q |
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| T |
6117354 |
ctaagattaagatcaatgtaaatttataccctttaaaccatgaagtattccgttggattcaaaaccatcttctcaccctaaatatttttcatatgataaa |
6117453 |
T |
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| Q |
119 |
ccgactatttaaaaaacttataatttatggttgttcatttatatatagctagaataaatatcagttnnnnnnncctttacaatatgtagacgattgtata |
218 |
Q |
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| T |
6117454 |
ctgagtatttaaaaaacttataatttatggttgttcatttatatatagctagaataaatatcagttaaaaaaacctttacaatatgtagacgattgtata |
6117553 |
T |
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| Q |
219 |
catagaaaaatttgcagttgactaaagtgccattaaaggactatacaagaaacttataaacatatgcattcaaa--acatatatctttaccaacattatt |
316 |
Q |
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| T |
6117554 |
catagaaaaatttgcagttgactaaagtgccattaaaggactatacaagaaacttataaacatatgcattcaaaatatatatatctttaccaacattatt |
6117653 |
T |
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| Q |
317 |
attgttagtagtgataatcgtccttgtagaatagaaggttatagctaggtttgatatggcctatccaaaaaatccatcatcttttaaattcatatccatg |
416 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6117654 |
attgttagtagtgataatcgtccttgtagagtagaaggtta----taggtttgatatggcctatccaaaaaatccatcatcttttaaattcatatccatg |
6117749 |
T |
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| Q |
417 |
gacaaaaccaaaattaataatactgacctacaattgcaacaataatagtactagtat |
473 |
Q |
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| T |
6117750 |
gtcaaaaccaaaattaataatactggcctacaattgcaacaataatagtactagtat |
6117806 |
T |
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