View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7426_high_4 (Length: 407)
Name: NF7426_high_4
Description: NF7426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7426_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 390
Target Start/End: Complemental strand, 41424545 - 41424169
Alignment:
| Q |
14 |
cctgtgtaaatctcctctgcctgagattattcgcacaagcgatgaattcaagttgcaacataataacattacgtaagtggaaacacagttcaacactatc |
113 |
Q |
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| T |
41424545 |
cctgtataaatctcctctgcctgagattattcgcacaagcgatgaattcaagttgcaacataataacattacgtaagtggaaacacagttcaacactatc |
41424446 |
T |
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| Q |
114 |
tctagtttagcttatgttaactggaccgtagtatttaaacaaaaattgtaatatataaaccataagattgaatnnnnnnnngttttgc-gtcacagacat |
212 |
Q |
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| T |
41424445 |
tctagtttagcttatgttaactggaccgtagtatttaaacataaattgtaatatataaaccataagattgaataaaaaaa-gttttgcagtcacagacat |
41424347 |
T |
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| Q |
213 |
aagcacaattgactgaacaacgtgatcaaatatatcatgtgttatctgtttgtgcttttcacatctgtttaccattaaataagggtttctgttccaacgg |
312 |
Q |
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| T |
41424346 |
aagcacaattgactgaacaacgtgatcaaatatatcatgtgttatctgtttgtgcttttcacatctgtttaccattaaataagggtttctattccaacgg |
41424247 |
T |
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| Q |
313 |
ttttctatttggtttattgagcatttaggaaagttaagtgaagcatacatacctcatgaatgaatccagttggtattt |
390 |
Q |
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| T |
41424246 |
ttttctatttggtttattgagcatttaggaaagttaagtgaagcatacatacctcatgaatgaatccagttggtattt |
41424169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 10842677 - 10842626
Alignment:
| Q |
135 |
tggaccgtagtatttaaacaaaaattgtaatatataaaccataagattgaat |
186 |
Q |
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| T |
10842677 |
tggaccgtagtatttaaacacaaattgtaatatgtaaatcctaagcttgaat |
10842626 |
T |
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