View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7426_high_6 (Length: 339)

Name: NF7426_high_6
Description: NF7426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7426_high_6
NF7426_high_6
[»] chr2 (6 HSPs)
chr2 (1-322)||(11951414-11951735)
chr2 (1-106)||(45682232-45682340)
chr2 (1-108)||(2743725-2743834)
chr2 (224-283)||(2743969-2744028)
chr2 (258-322)||(28173413-28173475)
chr2 (3-40)||(45682183-45682220)
[»] scaffold0312 (3 HSPs)
scaffold0312 (126-322)||(18890-19086)
scaffold0312 (2-118)||(18729-18847)
scaffold0312 (2-35)||(18618-18651)
[»] chr1 (4 HSPs)
chr1 (126-322)||(411484-411680)
chr1 (2-118)||(411723-411841)
chr1 (68-106)||(11109768-11109806)
chr1 (2-35)||(411919-411952)
[»] chr4 (5 HSPs)
chr4 (224-322)||(2464464-2464560)
chr4 (1-118)||(6736769-6736888)
chr4 (51-107)||(2464276-2464332)
chr4 (239-283)||(6736585-6736629)
chr4 (2-35)||(2464260-2464293)
[»] chr7 (6 HSPs)
chr7 (224-307)||(26300143-26300226)
chr7 (1-39)||(15687991-15688029)
chr7 (10-52)||(15695521-15695563)
chr7 (1-39)||(15695584-15695622)
chr7 (10-52)||(15702501-15702543)
chr7 (1-39)||(15702564-15702602)
[»] chr3 (6 HSPs)
chr3 (227-322)||(45227735-45227829)
chr3 (4-118)||(45227445-45227561)
chr3 (4-118)||(29896940-29897056)
chr3 (1-42)||(45227396-45227437)
chr3 (10-41)||(13468089-13468120)
chr3 (224-289)||(29896741-29896807)
[»] chr6 (5 HSPs)
chr6 (1-108)||(29934840-29934949)
chr6 (5-100)||(33296209-33296307)
chr6 (224-283)||(29935084-29935143)
chr6 (10-39)||(33296155-33296184)
chr6 (10-42)||(27314022-27314054)
[»] chr5 (3 HSPs)
chr5 (5-45)||(37369969-37370009)
chr5 (10-40)||(37369065-37369095)
chr5 (5-39)||(37369094-37369128)
[»] scaffold0608 (1 HSPs)
scaffold0608 (68-106)||(5205-5243)
[»] chr8 (5 HSPs)
chr8 (10-40)||(21542009-21542039)
chr8 (12-52)||(21541795-21541835)
chr8 (10-38)||(21541865-21541893)
chr8 (4-52)||(21541895-21541943)
chr8 (5-45)||(21541968-21542008)
[»] scaffold0927 (1 HSPs)
scaffold0927 (10-39)||(3511-3540)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 11951414 - 11951735
Alignment:
Q  1 tatctccgctcgccacaacgaagagataatgtggtatatctctgtgcaccacgaagagaaaatttggtttatgtataaatagagaaaagagataaatgat 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11951414 tatctccgctcgccataacgaagagataatgtggtatatctctgttcaccacgaagagaaaatttggtttatgtacaaatagagaaaagagataaatgat 11951513  T
Q  101 attagtcatcttaaaatgttaagggtatatatgactaatcattggttcattctaagggtttttgtgaatagtatgagttttttcgaatagtattgactta 200  Q
    |||| |||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11951514 attaatcatgttgaaatgttaagggtatatatgactaatcattggttcatgctaagggtttttgtgaatagtatgagttttttcgaatagtattgactta 11951613  T
Q  201 gatattacaaggannnnnnnngggcatgaatgagtttccaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaattttcatttat 300  Q
    |||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11951614 gatattacaaggattttttttgggcatgaatgagtttccaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaattttcatttat 11951713  T
Q  301 ccattatatgtccactttgttt 322  Q
    | |||| |||||||||||||||    
T  11951714 ctattaaatgtccactttgttt 11951735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 45682232 - 45682340
Alignment:
Q  1 tatctccgctcgccacaacgaagagataatgtggtatatctctgt---gcaccacgaagagaaaatttggtttatgtataaatagagaaaagagataaat 97  Q
    |||||||| ||||||||||||||||||||||||||||||| | ||    ||| ||||||||| ||| |||||||| || |||||| ||||||||||||||    
T  45682232 tatctccgttcgccacaacgaagagataatgtggtatatccccgtttgccacaacgaagagataatgtggtttatttacaaatagtgaaaagagataaat 45682331  T
Q  98 gatattagt 106  Q
    |||||||||    
T  45682332 gatattagt 45682340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 2743725 - 2743834
Alignment:
Q  1 tatctccgctcgccacaacgaagagataatgtggtatatctctgt---gcaccacgaagagaaaatttggtttatgtataaatagagaaaagagataaat 97  Q
    |||||||| ||||||||||||||||| ||||||||||||| | ||    ||| ||||||||||| | ||||||||||| |||||| |||||||||| |||    
T  2743725 tatctccgttcgccacaacgaagaga-aatgtggtatatcaccgttcgccacaacgaagagaaattgtggtttatgtacaaatagtgaaaagagatcaat 2743823  T
Q  98 gatattagtca 108  Q
    |||||||||||    
T  2743824 gatattagtca 2743834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 2743969 - 2744028
Alignment:
Q  224 gcatgaatgagtttccaaaggatgaaatttttagtttaaaaattgtttggataaagaccg 283  Q
    |||||||||||||| |||| ||||||| |||||||||||||||||||||| |||||||||    
T  2743969 gcatgaatgagttttcaaatgatgaaacttttagtttaaaaattgtttgggtaaagaccg 2744028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 28173413 - 28173475
Alignment:
Q  258 tttaaaaattgtttggataaagaccggtgaaattttcatttatccattatatgtccactttgttt 322  Q
    ||||||||||||||||||||||||||||||||  |||| || |||||  ||||||||||||||||    
T  28173413 tttaaaaattgtttggataaagaccggtgaaaacttcacttgtccat--tatgtccactttgttt 28173475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 45682220 - 45682183
Alignment:
Q  3 tctccgctcgccacaacgaagagataatgtggtatatc 40  Q
    |||||| |||||||||||||||||||||||||||||||    
T  45682220 tctccgttcgccacaacgaagagataatgtggtatatc 45682183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 126 - 322
Target Start/End: Original strand, 18890 - 19086
Alignment:
Q  126 tatatatgactaatcattggttcattctaagggtttttgt-gaatagtatgagttttt-tcgaatagtattgacttagatattacaaggannnnnnnngg 223  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||| |||| |        ||    
T  18890 tatatatgactaatcattggttcatgctaagggtttttgtcgaatagtatgagtttttgtcgaatagtattgacgtggatattgcaagtattttttttgg 18989  T
Q  224 gcatgaatgagtttccaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaattttcatttatccattatatgtccactttgttt 322  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||  ||||||||||||||||    
T  18990 gcatgaatgagtttccaaatgatgaaatttttagtttaaaaattgtttgggtaaagaccggtgaaattttcacctatccat--tatgtccactttgttt 19086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 18729 - 18847
Alignment:
Q  2 atctccgctcgccacaacgaagagataatgtggtatatctctgtgcaccac---gaagagaaaatttggtttatgtataaatagagaaaagagataaatg 98  Q
    ||||||| ||||||||||||||||||||||||||| ||||| || ||||||   ||||||| ||| ||||||||||| |||||| |||||||||||| ||    
T  18729 atctccgttcgccacaacgaagagataatgtggta-atctccgttcaccacaacgaagagataatgtggtttatgtacaaatagtgaaaagagataattg 18827  T
Q  99 atattagtcatcttaaaatg 118  Q
    || |||||||| || |||||    
T  18828 atcttagtcatgttgaaatg 18847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 18618 - 18651
Alignment:
Q  2 atctccgctcgccacaacgaagagataatgtggt 35  Q
    ||||||| ||||||||||||||||||||||||||    
T  18618 atctccgttcgccacaacgaagagataatgtggt 18651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 126 - 322
Target Start/End: Complemental strand, 411680 - 411484
Alignment:
Q  126 tatatatgactaatcattggttcattctaagggtttttgt-gaatagtatgagttttt-tcgaatagtattgacttagatattacaaggannnnnnnngg 223  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||| |||| |        ||    
T  411680 tatatatgactaatcattggttcatgctaagggtttttgtcgaatagtatgagtttttgtcgaatagtattgacgtggatattgcaagtattttttttgg 411581  T
Q  224 gcatgaatgagtttccaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaattttcatttatccattatatgtccactttgttt 322  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||  ||||||||||||||||    
T  411580 gcatgaatgagtttccaaatgatgaaatttttagtttaaaaattgtttgggtaaagaccggtgaaattttcacctatccat--tatgtccactttgttt 411484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 411841 - 411723
Alignment:
Q  2 atctccgctcgccacaacgaagagataatgtggtatatctctgtgcaccac---gaagagaaaatttggtttatgtataaatagagaaaagagataaatg 98  Q
    ||||||| ||||||||||||||||||||||||||| ||||| || ||||||   ||||||| ||| ||||||||||| |||||| |||||||||||| ||    
T  411841 atctccgttcgccacaacgaagagataatgtggta-atctccgttcaccacaacgaagagataatgtggtttatgtacaaatagtgaaaagagataattg 411743  T
Q  99 atattagtcatcttaaaatg 118  Q
    || |||||||| || |||||    
T  411742 atcttagtcatgttgaaatg 411723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 11109768 - 11109806
Alignment:
Q  68 tttatgtataaatagagaaaagagataaatgatattagt 106  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  11109768 tttatgtacaaatagtgaaaagagataaatgatattagt 11109806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 411952 - 411919
Alignment:
Q  2 atctccgctcgccacaacgaagagataatgtggt 35  Q
    ||||||| ||||||||||||||||||||||||||    
T  411952 atctccgttcgccacaacgaagagataatgtggt 411919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 322
Target Start/End: Original strand, 2464464 - 2464560
Alignment:
Q  224 gcatgaatgagtttccaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaattttcatttatccattatatgtccactttgttt 322  Q
    |||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||  |||| | ||||||  ||||||||||||||||    
T  2464464 gcatgaatgagttttcaaaggatgaaatttttagttaaaaaatggtttggataaagaccggtgaaaacttcactcatccat--tatgtccactttgttt 2464560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 6736888 - 6736769
Alignment:
Q  1 tatctccgctcgccacaacgaagagataatgtggtatatctctgtgcaccac---gaagagaaaatttggtttatgtataaatagagaaaagagataaat 97  Q
    |||||||| |||||||||| |||||| |||||| ||||| || || | ||||   ||||||| ||| ||||||||||| |||||| ||||||||||||||    
T  6736888 tatctccgttcgccacaacaaagaga-aatgtgctatatttccgttcgccacaacgaagagataatatggtttatgtacaaatagtgaaaagagataaat 6736790  T
Q  98 gatattagtcatcttaaaatg 118  Q
    |||||||||||| || |||||    
T  6736789 gatattagtcatgttgaaatg 6736769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 2464276 - 2464332
Alignment:
Q  51 acgaagagaaaatttggtttatgtataaatagagaaaagagataaatgatattagtc 107  Q
    ||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  2464276 acgaagagataatgtggtttatgtacaaatagtgaaaagagataaatgatattagtc 2464332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 6736629 - 6736585
Alignment:
Q  239 caaaggatgaaatttttagtttaaaaattgtttggataaagaccg 283  Q
    |||||||||||| |||||||||||||||||||||| |||||||||    
T  6736629 caaaggatgaaacttttagtttaaaaattgtttgggtaaagaccg 6736585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 2464260 - 2464293
Alignment:
Q  2 atctccgctcgccacaacgaagagataatgtggt 35  Q
    ||||||| ||||||||||||||||||||||||||    
T  2464260 atctccgttcgccacaacgaagagataatgtggt 2464293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 26300226 - 26300143
Alignment:
Q  224 gcatgaatgagtttccaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaattttcatttatccattat 307  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||  |||| | |||||||||    
T  26300226 gcatgaatgagttttcaaaggatgaaatttttagtttaaaaattgtttggataatgaccgatgaaaacttcactcatccattat 26300143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 15687991 - 15688029
Alignment:
Q  1 tatctccgctcgccacaacgaagagataatgtggtatat 39  Q
    |||||||| || |||||||||||||||||||||||||||    
T  15687991 tatctccgttcaccacaacgaagagataatgtggtatat 15688029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 15695521 - 15695563
Alignment:
Q  10 tcgccacaacgaagagataatgtggtatatctctgtgcaccac 52  Q
    |||||||||||||||||||||||||||||| || || ||||||    
T  15695521 tcgccacaacgaagagataatgtggtatatttccgttcaccac 15695563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 15695584 - 15695622
Alignment:
Q  1 tatctccgctcgccacaacgaagagataatgtggtatat 39  Q
    |||||||| || |||||||||||||||||||||||||||    
T  15695584 tatctccgttcaccacaacgaagagataatgtggtatat 15695622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 15702501 - 15702543
Alignment:
Q  10 tcgccacaacgaagagataatgtggtatatctctgtgcaccac 52  Q
    |||||||||||||||||||||||||||||| || || ||||||    
T  15702501 tcgccacaacgaagagataatgtggtatatttccgttcaccac 15702543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 15702564 - 15702602
Alignment:
Q  1 tatctccgctcgccacaacgaagagataatgtggtatat 39  Q
    |||||||| || |||||||||||||||||||||||||||    
T  15702564 tatctccgttcaccacaacgaagagataatgtggtatat 15702602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 227 - 322
Target Start/End: Original strand, 45227735 - 45227829
Alignment:
Q  227 tgaatgagtttccaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaattttcatttatccattatatgtccactttgttt 322  Q
    |||||||| || | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| | ||||||||||||    
T  45227735 tgaatgagctttcgaaggatgaaattgttagtttaaaaattgtttgggtaaagaccggtgaaattttcacttacccattat-tttccactttgttt 45227829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 45227445 - 45227561
Alignment:
Q  4 ctccgctcgccacaacgaagagataatgtggtatatctctgtgcaccac---gaagagaaaatttggtttatgtataaatagagaaaagagataaatgat 100  Q
    ||||| |||||||||| |||||| |||||| |||||||| || ||||||   ||||||| ||| ||||||||||| |||||| |||||||||||||||||    
T  45227445 ctccgttcgccacaacaaagaga-aatgtgatatatctccgttcaccacaacgaagagataatgtggtttatgtacaaatagtgaaaagagataaatgat 45227543  T
Q  101 attagtcatcttaaaatg 118  Q
    ||||||||| || |||||    
T  45227544 attagtcatgttgaaatg 45227561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 29897056 - 29896940
Alignment:
Q  4 ctccgctcgccacaacgaagagataatgtggtatatctctgtgcaccac---gaagagaaaatttggtttatgtataaatagagaaaagagataaatgat 100  Q
    ||||| || |||||||||||||| |||||||||||||||||| | ||||   ||| ||| ||| ||||||||||| |||||| ||| |||| ||||||||    
T  29897056 ctccgttcaccacaacgaagaga-aatgtggtatatctctgttcgccacaacgaaaagataatgtggtttatgtagaaatagcgaatagaggtaaatgat 29896958  T
Q  101 attagtcatcttaaaatg 118  Q
    ||||| | | ||||||||    
T  29896957 attaggcgtgttaaaatg 29896940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45227396 - 45227437
Alignment:
Q  1 tatctccgctcgccacaacgaagagataatgtggtatatctc 42  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  45227396 tatctccgttcgccacaacgaagagataatgtggtatatctc 45227437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 13468089 - 13468120
Alignment:
Q  10 tcgccacaacgaagagataatgtggtatatct 41  Q
    ||||||||||||||||||||||||||||||||    
T  13468089 tcgccacaacgaagagataatgtggtatatct 13468120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 29896807 - 29896741
Alignment:
Q  224 gcatgaatgagtttccaaaggatgaaatttttagtttaaaaat--tgtttggataaagaccggtgaaa 289  Q
    ||||||||||| ||  |||||||||| |||||||||||||||   || ||||||||||||||||||||    
T  29896807 gcatgaatgagctttaaaaggatgaa-tttttagtttaaaaaaaatggttggataaagaccggtgaaa 29896741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 29934840 - 29934949
Alignment:
Q  1 tatctccgctcgccacaacgaagagataatgtggtatatctctgt---gcaccacgaagagaaaatttggtttatgtataaatagagaaaagagataaat 97  Q
    |||| ||| ||||||||||||||||| ||||||||||||| | ||    ||| ||||||||||| | ||||||||||| |||||| |||||||||| |||    
T  29934840 tatcaccgttcgccacaacgaagaga-aatgtggtatatcaccgttcgccacaacgaagagaaattgtggtttatgtacaaatagtgaaaagagatcaat 29934938  T
Q  98 gatattagtca 108  Q
    |||| ||||||    
T  29934939 gatagtagtca 29934949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 33296209 - 33296307
Alignment:
Q  5 tccgctcgccacaacgaagagataatgtggtatatctctgt---gcaccacgaagagaaaatttggtttatgtataaatagagaaaagagataaatgat 100  Q
    |||| ||||||||||||||| |||||||||||||| || ||    ||| ||||||||| ||| ||||||||||| |||||  |||||||||||||||||    
T  33296209 tccgttcgccacaacgaagaaataatgtggtatatttccgttcgccacaacgaagagataatgtggtttatgtacaaataatgaaaagagataaatgat 33296307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 29935084 - 29935143
Alignment:
Q  224 gcatgaatgagtttccaaaggatgaaatttttagtttaaaaattgtttggataaagaccg 283  Q
    ||||||||||| || |||| ||||||| |||||||||||||||||||||| |||||||||    
T  29935084 gcatgaatgagctttcaaatgatgaaacttttagtttaaaaattgtttgggtaaagaccg 29935143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 33296155 - 33296184
Alignment:
Q  10 tcgccacaacgaagagataatgtggtatat 39  Q
    ||||||||||||||||||||||||||||||    
T  33296155 tcgccacaacgaagagataatgtggtatat 33296184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 27314054 - 27314022
Alignment:
Q  10 tcgccacaacgaagagataatgtggtatatctc 42  Q
    |||||||||||||||||||||||||| ||||||    
T  27314054 tcgccacaacgaagagataatgtggtctatctc 27314022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 37369969 - 37370009
Alignment:
Q  5 tccgctcgccacaacgaagagataatgtggtatatctctgt 45  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  37369969 tccgttcgccacaacgaagagataatgtggtatatctctgt 37370009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 37369065 - 37369095
Alignment:
Q  10 tcgccacaacgaagagataatgtggtatatc 40  Q
    |||||||||||||||||||||||||||||||    
T  37369065 tcgccacaacgaagagataatgtggtatatc 37369095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 37369094 - 37369128
Alignment:
Q  5 tccgctcgccacaacgaagagataatgtggtatat 39  Q
    |||| ||||||||||||||||||||||||||||||    
T  37369094 tccgttcgccacaacgaagagataatgtggtatat 37369128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 5205 - 5243
Alignment:
Q  68 tttatgtataaatagagaaaagagataaatgatattagt 106  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  5205 tttatgtacaaatagtgaaaagagataaatgatattagt 5243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 21542009 - 21542039
Alignment:
Q  10 tcgccacaacgaagagataatgtggtatatc 40  Q
    |||||||||||||||||||||||||||||||    
T  21542009 tcgccacaacgaagagataatgtggtatatc 21542039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 21541795 - 21541835
Alignment:
Q  12 gccacaacgaagagataatgtggtatatctctgtgcaccac 52  Q
    |||||||||||||||||||||||||||| || || ||||||    
T  21541795 gccacaacgaagagataatgtggtatatatccgttcaccac 21541835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 21541865 - 21541893
Alignment:
Q  10 tcgccacaacgaagagataatgtggtata 38  Q
    |||||||||||||||||||||||||||||    
T  21541865 tcgccacaacgaagagataatgtggtata 21541893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 21541895 - 21541943
Alignment:
Q  4 ctccgctcgccacaacgaagagataatgtggtatatctctgtgcaccac 52  Q
    ||||| ||||||||||||||||||||| |||||||| || || ||||||    
T  21541895 ctccgttcgccacaacgaagagataatatggtatatatccgttcaccac 21541943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 21541968 - 21542008
Alignment:
Q  5 tccgctcgccacaacgaagagataatgtggtatatctctgt 45  Q
    |||| |||||||||||||| |||||||||||||| ||||||    
T  21541968 tccgttcgccacaacgaagggataatgtggtatacctctgt 21542008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 3540 - 3511
Alignment:
Q  10 tcgccacaacgaagagataatgtggtatat 39  Q
    ||||||||||||||||||||||||||||||    
T  3540 tcgccacaacgaagagataatgtggtatat 3511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University