View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7426_low_10 (Length: 249)

Name: NF7426_low_10
Description: NF7426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7426_low_10
NF7426_low_10
[»] chr6 (19 HSPs)
chr6 (19-149)||(29136409-29136539)
chr6 (35-188)||(29123220-29123373)
chr6 (43-188)||(32745699-32745844)
chr6 (46-188)||(29144360-29144502)
chr6 (84-181)||(29299150-29299247)
chr6 (46-181)||(29152923-29153058)
chr6 (46-188)||(29130393-29130535)
chr6 (58-188)||(34279370-34279500)
chr6 (85-161)||(32973515-32973591)
chr6 (46-164)||(23216815-23216933)
chr6 (67-161)||(21379307-21379401)
chr6 (47-179)||(29149712-29149844)
chr6 (46-188)||(34259099-34259241)
chr6 (67-112)||(29012044-29012089)
chr6 (100-181)||(34281046-34281127)
chr6 (88-189)||(25320190-25320291)
chr6 (88-189)||(26149883-26149984)
chr6 (101-144)||(32958423-32958466)
chr6 (67-145)||(21375215-21375293)
[»] scaffold0134 (1 HSPs)
scaffold0134 (46-186)||(17097-17237)
[»] chr4 (7 HSPs)
chr4 (92-188)||(9603448-9603544)
chr4 (46-188)||(9594599-9594741)
chr4 (85-188)||(9573444-9573548)
chr4 (94-188)||(54295949-54296043)
chr4 (58-186)||(9568300-9568431)
chr4 (58-188)||(9582815-9582945)
chr4 (58-188)||(9588510-9588640)
[»] chr5 (6 HSPs)
chr5 (46-188)||(27174314-27174456)
chr5 (88-188)||(42777087-42777187)
chr5 (67-188)||(42782260-42782381)
chr5 (98-179)||(40548366-40548447)
chr5 (67-188)||(41227002-41227123)
chr5 (47-179)||(37512003-37512135)
[»] chr7 (2 HSPs)
chr7 (62-164)||(42445424-42445526)
chr7 (46-140)||(25627341-25627435)
[»] scaffold0129 (1 HSPs)
scaffold0129 (67-180)||(34379-34492)
[»] chr2 (3 HSPs)
chr2 (133-185)||(7525013-7525065)
chr2 (127-185)||(7436181-7436239)
chr2 (71-185)||(7499768-7499882)
[»] chr1 (1 HSPs)
chr1 (67-179)||(51875534-51875646)
[»] scaffold0831 (1 HSPs)
scaffold0831 (51-113)||(2107-2169)
[»] scaffold0054 (1 HSPs)
scaffold0054 (103-144)||(38589-38630)
[»] chr8 (1 HSPs)
chr8 (62-110)||(3368670-3368718)


Alignment Details
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 29136539 - 29136409
Alignment:
Q  19 gatccgtcatcggaacaagaattagatgataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgc 118  Q
    ||||| ||||| |||  ||||||||||||||| ||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29136539 gatccatcatcagaaagagaattagatgataacaaattgttgcggaacatgttcatgaaacgagtattttcaaataagagagaccatgatttgcaaacgc 29136440  T
Q  119 attcaatacgcttgaaagatttaagaggcaa 149  Q
    |||||||||||||||||||||||||||||||    
T  29136439 attcaatacgcttgaaagatttaagaggcaa 29136409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 29123373 - 29123220
Alignment:
Q  35 aagaattagatgataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaa 134  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||| |||| | ||||||||||||||||||| |||| ||||||  || || ||    
T  29123373 aagaattagatgataagaaattgttgcggaacatgttcatgaaatgagtatcttcagacaagagagaccatgatttgcgaacggattcaactcgtttaaa 29123274  T
Q  135 agatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatata 188  Q
    ||||||||||||||| |||||||||||||| || ||||||||||||| ||||||    
T  29123273 agatttaagaggcaattttgatagaatggagaaggcaatatcatcagatatata 29123220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 32745699 - 32745844
Alignment:
Q  43 gatgataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaa 142  Q
    |||||||||||||||||| | || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  || || ||||||||||    
T  32745699 gatgataagaaattgttgcgaaacatgttcatgaaatgagtattttcagataagagagaccatgatttgcgaacgcattcaaatcgtttaaaagatttaa 32745798  T
Q  143 gaggcaactttgatagaatggaaaaagcaatatcatcaggtatata 188  Q
    |||| |  |||||||| ||||| || ||||||||||||||||||||    
T  32745799 gaggtagttttgataggatggagaaggcaatatcatcaggtatata 32745844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 188
Target Start/End: Complemental strand, 29144502 - 29144360
Alignment:
Q  46 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 145  Q
    ||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |||| ||||| | ||||||| |||  ||||| |||||||||||||    
T  29144502 gataagaaattgttgcggaacatgttcatgaaatgagtatcttcaaataagagataccaagatttacgaacgcatccaaatcgcttcaaagatttaagag 29144403  T
Q  146 gcaactttgatagaatggaaaaagcaatatcatcaggtatata 188  Q
    |||| || ||||||||||| || |||||||||||  |||||||    
T  29144402 gcaatttcgatagaatggataaggcaatatcatcgagtatata 29144360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 29299247 - 29299150
Alignment:
Q  84 attttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcag 181  Q
    ||||||||| ||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  29299247 attttcaaacaagagagaccatgatttgcgaacacattcaaaacgcttaaaagatttaagaggcaactttgagagaatggaaaaagctatatcatcag 29299150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 181
Target Start/End: Original strand, 29152923 - 29153058
Alignment:
Q  46 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 145  Q
    ||||||||||| ||| |||| ||||||||||| |||   |||||| ||| ||| ||||||||||||| ||| ||||||| | ||||||||||||||||||    
T  29152923 gataagaaattattgcggaacatgttcatgaagtgatgtttttcagataggagggaccatgatttgcgaacacattcaaaatgcttgaaagatttaagag 29153022  T
Q  146 gcaactttgatagaatggaaaaagcaatatcatcag 181  Q
    |||| ||||| |||||||| || |||||||||||||    
T  29153023 gcaattttgagagaatggagaaggcaatatcatcag 29153058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 188
Target Start/End: Complemental strand, 29130535 - 29130393
Alignment:
Q  46 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 145  Q
    ||||||| | |||||||||| |||||||||||   | |||||||| | ||||||||||||||||| | |||| ||||||  |||||||||||||||||||    
T  29130535 gataagagactgttgtggaacatgttcatgaacaaactattttcatacaagagagaccatgatttacgaacggattcaaatcgcttgaaagatttaagag 29130436  T
Q  146 gcaactttgatagaatggaaaaagcaatatcatcaggtatata 188  Q
    |||||||||| |||||||| ||   |||||||| |||||||||    
T  29130435 gcaactttgagagaatggagaagtgaatatcatgaggtatata 29130393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 188
Target Start/End: Original strand, 34279370 - 34279500
Alignment:
Q  58 ttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgata 157  Q
    |||||||| ||||||||||| |||  ||||||| |||| ||| |||||||||| ||||| ||||||| || |||||||||||||||||| || ||||| |    
T  34279370 ttgtggaacatgttcatgaagtgatgattttcagataaaagataccatgatttacaaacacattcaaaactcttgaaagatttaagaggtaattttgaaa 34279469  T
Q  158 gaatggaaaaagcaatatcatcaggtatata 188  Q
    ||||||| || ||||||||||||| ||||||    
T  34279470 gaatggagaaggcaatatcatcagatatata 34279500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 32973515 - 32973591
Alignment:
Q  85 ttttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaat 161  Q
    |||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||    
T  32973515 ttttcagataagagagaccatgatttacaaacacattcaaaacgcttgaaagatttaagaggcaattttgatagaat 32973591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 23216815 - 23216933
Alignment:
Q  46 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 145  Q
    |||||||| || ||| | || |||||||||||||||| ||| |||| |||||||||||||||||||| ||| |||||||  | ||| |||||||||||||    
T  23216815 gataagaagttattgcgaaacatgttcatgaaatgagaattatcaattaagagagaccatgatttgcgaacacattcaaatctcttcaaagatttaagag 23216914  T
Q  146 gcaactttgatagaatgga 164  Q
    | ||||| |||||||||||    
T  23216915 gtaacttcgatagaatgga 23216933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 21379307 - 21379401
Alignment:
Q  67 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaat 161  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| |  |||||| |||  ||||| |||||||||||||| ||||| ||||||||    
T  21379307 atgttcatgaaataagtgttttcaaataagagagaccatgatttacggacgcatccaaatcgcttcaaagatttaagaggtaacttcgatagaat 21379401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 179
Target Start/End: Original strand, 29149712 - 29149844
Alignment:
Q  47 ataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagagg 146  Q
    |||||||||||| | | || ||| ||||||| ||| |||| ||| | ||||||||||||||||||| |||||||||||  |  || ||||||||||||||    
T  29149712 ataagaaattgtggcgaaacatgctcatgaagtgattattctcagacaagagagaccatgatttgcgaacgcattcaaatcagttaaaagatttaagagg 29149811  T
Q  147 caactttgatagaatggaaaaagcaatatcatc 179  Q
    ||| ||||| |||||||| || || ||||||||    
T  29149812 caattttgagagaatggagaaggctatatcatc 29149844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 188
Target Start/End: Original strand, 34259099 - 34259241
Alignment:
Q  46 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 145  Q
    |||| |||||||||| |||| |||||||||||| |||| | ||  |||||||||||||||||||| | ||||||| |||  ||||| ||||| |||||||    
T  34259099 gatatgaaattgttgcggaacatgttcatgaaacgagtgtcttgtaataagagagaccatgatttacgaacgcatccaaatcgctttaaagacttaagag 34259198  T
Q  146 gcaactttgatagaatggaaaaagcaatatcatcaggtatata 188  Q
    | |  ||   |||||| || || |||||||||| |||||||||    
T  34259199 gtagtttgtgtagaatagagaaggcaatatcatgaggtatata 34259241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 29012089 - 29012044
Alignment:
Q  67 atgttcatgaaatgagtattttcaaataagagagaccatgatttgc 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  29012089 atgttcatgaaatgagtattttcaaacaagagagaccatgatttgc 29012044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 34281127 - 34281046
Alignment:
Q  100 gaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcag 181  Q
    ||||||||||||| ||  || |||| |||||||||||||||||||||||| ||||| ||||| || || |||||||||||||    
T  34281127 gaccatgatttgcgaagacactcaaaacgcttgaaagatttaagaggcaattttgagagaatagagaaggcaatatcatcag 34281046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 25320190 - 25320291
Alignment:
Q  88 tcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatat 187  Q
    ||||||||||| ||||||||||| | ||  |||| ||  ||||| ||||||||||| ||||||||||||||||| ||||  || |||||||| | |||||    
T  25320190 tcaaataagagggaccatgattttcgaatacattgaaatcgcttaaaagatttaagcggcaactttgatagaattgaaacggctatatcatctgatatat 25320289  T
Q  188 aa 189  Q
    ||    
T  25320290 aa 25320291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 26149883 - 26149984
Alignment:
Q  88 tcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatat 187  Q
    ||||||||||| ||||||||||| | ||  |||| ||  ||||| ||||||||||| ||||||||||||||||| ||||  || |||||||| | |||||    
T  26149883 tcaaataagagggaccatgattttcgaatacattgaaatcgcttaaaagatttaagcggcaactttgatagaattgaaacggctatatcatctgatatat 26149982  T
Q  188 aa 189  Q
    ||    
T  26149983 aa 26149984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 32958423 - 32958466
Alignment:
Q  101 accatgatttgcaaacgcattcaatacgcttgaaagatttaaga 144  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||    
T  32958423 accatgatttgcaaacgaattcaaaacgcatgaaagatttaaga 32958466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 21375215 - 21375293
Alignment:
Q  67 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 145  Q
    ||||||||||||| | | |||||||||||||| |||||||||||  | |||||| |||  | ||| |||||||||||||    
T  21375215 atgttcatgaaataaatgttttcaaataagagggaccatgatttatagacgcatccaaatcacttcaaagatttaagag 21375293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 17097 - 17237
Alignment:
Q  46 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 145  Q
    ||||||||||| ||| | ||  |||||||||||| || ||| |||| ||||||||||||||||||||||||||||||||  | ||| |||||||||||||    
T  17097 gataagaaattattgcgaaacttgttcatgaaataagaattatcaattaagagagaccatgatttgcaaacgcattcaaatctcttcaaagatttaagag 17196  T
Q  146 gcaactttgatagaatggaaaaagcaatatcatcaggtata 186  Q
    ||||||||||||||||||| ||   |||||| |||||||||    
T  17197 gcaactttgatagaatggataagctaatatcgtcaggtata 17237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 9603448 - 9603544
Alignment:
Q  92 ataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatata 188  Q
    ||||||||||||||| ||| |||| ||||||||  ||||| ||||||||||||||||| || ||||||||||| || ||||||||||||||||||||    
T  9603448 ataagagagaccatggtttacaaaagcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatata 9603544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 188
Target Start/End: Original strand, 9594599 - 9594741
Alignment:
Q  46 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 145  Q
    ||||||| ||||||| |||| ||||||||||| |||   |||||| ||||||||||||||| ||||| ||| |||||||  ||||| |||||||||| ||    
T  9594599 gataagagattgttgcggaacatgttcatgaagtgatcgttttcacataagagagaccatgctttgcgaacacattcaaatcgcttaaaagatttaatag 9594698  T
Q  146 gcaactttgatagaatggaaaaagcaatatcatcaggtatata 188  Q
    | || || ||||||||||| || | ||||||||||| ||||||    
T  9594699 gtaatttagatagaatggagaaggaaatatcatcagctatata 9594741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 9573548 - 9573444
Alignment:
Q  85 ttttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagc-aatatcatcaggt 183  Q
    ||||||| ||| |||||||||||||||| ||| |||||||  ||||| |||||||||| |||||| || ||||||||||| || || |||||||||||||    
T  9573548 ttttcaattaacagagaccatgatttgcgaacacattcaaatcgcttaaaagatttaataggcaatttggatagaatggagaaggcaaatatcatcaggt 9573449  T
Q  184 atata 188  Q
    |||||    
T  9573448 atata 9573444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 54295949 - 54296043
Alignment:
Q  94 aagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatata 188  Q
    ||||||||||||||| | | |||||||||||  || || ||||||||||||||||  ||||||| |||||| || | ||||||||||||||||||    
T  54295949 aagagagaccatgatctacgaacgcattcaaatcgtttaaaagatttaagaggcagttttgataaaatggagaaggaaatatcatcaggtatata 54296043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 186
Target Start/End: Complemental strand, 9568431 - 9568300
Alignment:
Q  58 ttgtggaatatgttcatgaaatgagtattttcaaataaga---gagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttg 154  Q
    |||| ||| ||||||||||| ||||  |||||| ||||||   ||||||||||||| | |||||||||||  ||||| | |||||||| |||||| || |    
T  9568431 ttgtagaacatgttcatgaagtgagggttttcagataagatcagagaccatgatttacgaacgcattcaaatcgcttaatagatttaaaaggcaatttgg 9568332  T
Q  155 atagaatggaaaaagcaatatcatcaggtata 186  Q
    ||||||| || || ||||||||||||| ||||    
T  9568331 atagaatagagaaggcaatatcatcagatata 9568300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 188
Target Start/End: Original strand, 9582815 - 9582945
Alignment:
Q  58 ttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgata 157  Q
    |||| ||| ||||||||||| ||||  |||||| ||||||||||||||| ||||| || ||||||||  || || |  ||||||| |||||| || ||||    
T  9582815 ttgtagaacatgttcatgaagtgagggttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaatttggata 9582914  T
Q  158 gaatggaaaaagcaatatcatcaggtatata 188  Q
     ||| || || ||||| ||||||||||||||    
T  9582915 aaatagagaaggcaatttcatcaggtatata 9582945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 188
Target Start/End: Original strand, 9588510 - 9588640
Alignment:
Q  58 ttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgata 157  Q
    |||| ||| ||||||||||| ||||  |||||| ||||||||||||||| ||||| || ||||||||  || || |  ||||||| |||||| || ||||    
T  9588510 ttgtagaacatgttcatgaagtgagggttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaatttggata 9588609  T
Q  158 gaatggaaaaagcaatatcatcaggtatata 188  Q
     ||| || || ||||| ||||||||||||||    
T  9588610 aaatagagaaggcaatttcatcaggtatata 9588640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 188
Target Start/End: Original strand, 27174314 - 27174456
Alignment:
Q  46 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 145  Q
    ||||||||||||||  |||  |||||||||||| ||| |||||||||||| || || ||||||||||  |||||| |||  ||||| |||||||| ||||    
T  27174314 gataagaaattgttacggaccatgttcatgaaaagaggattttcaaataaaagtgatcatgatttgcgtacgcatccaaatcgcttcaaagatttcagag 27174413  T
Q  146 gcaactttgatagaatggaaaaagcaatatcatcaggtatata 188  Q
    | || ||||||||| | || || | |||||||||| |||||||    
T  27174414 gtaattttgatagatttgagaaggtaatatcatcatgtatata 27174456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 42777187 - 42777087
Alignment:
Q  88 tcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatat 187  Q
    |||||||||||||||||||||||||| || |||||||  || |||   ||||||| ||| || ||||| ||||| || ||||||||||||||| ||||||    
T  42777187 tcaaataagagagaccatgatttgcacacacattcaaatcgtttggttgatttaataggtaattttgagagaatagagaaagcaatatcatcatgtatat 42777088  T
Q  188 a 188  Q
    |    
T  42777087 a 42777087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 188
Target Start/End: Complemental strand, 42782381 - 42782260
Alignment:
Q  67 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaa 166  Q
    ||||||||||||  || |||||||||||  || ||||||||||| |  |||||| |||  ||||| ||||||||||  || || ||||||||||| || |    
T  42782381 atgttcatgaaaaaaggattttcaaatagaagtgaccatgatttacgtacgcatccaaatcgcttcaaagatttaatcggtaattttgatagaattgaga 42782282  T
Q  167 aagcaatatcatcaggtatata 188  Q
    | | |||||||||| |||||||    
T  42782281 aggtaatatcatcatgtatata 42782260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 40548447 - 40548366
Alignment:
Q  98 gagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatc 179  Q
    ||||||||||||| |  | ||||||||  ||||| |||||||||| ||| |  ||| ||||||||||||| |||||||||||    
T  40548447 gagaccatgatttacttatgcattcaaatcgcttcaaagatttaacaggaagtttttatagaatggaaaaggcaatatcatc 40548366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 188
Target Start/End: Complemental strand, 41227123 - 41227002
Alignment:
Q  67 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaa 166  Q
    ||||||||||||  || |||||||||||  || ||||||||||| || | ||||  ||  ||||| ||||||||||  || || ||||||||||| || |    
T  41227123 atgttcatgaaaaaaggattttcaaatagaagggaccatgatttacatatgcatcgaaatcgctttaaagatttaatcggtaattttgatagaattgaga 41227024  T
Q  167 aagcaatatcatcaggtatata 188  Q
    | | |||||||||| |||||||    
T  41227023 aggtaatatcatcatgtatata 41227002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 179
Target Start/End: Complemental strand, 37512135 - 37512003
Alignment:
Q  47 ataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagagg 146  Q
    ||||||||||||||  ||| ||| |||| || ||||  |||||||  ||  |||||||||||||||| ||  ||||||  || || |||||||| |||||    
T  37512135 ataagaaattgttgctgaacatgctcataaattgagggttttcaagcaattgagaccatgatttgcatacatattcaaatcgtttcaaagatttgagagg 37512036  T
Q  147 caactttgatagaatggaaaaagcaatatcatc 179  Q
    ||  ||||||| |||||| || ||||| |||||    
T  37512035 cagttttgataaaatggagaaggcaatgtcatc 37512003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 42445526 - 42445424
Alignment:
Q  62 ggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaat 161  Q
    |||| |||||||||||||||   |||||| |||||||||||||  |||| | ||| |||||||  ||||| |||||||||||||| || ||||||| |||    
T  42445526 ggaacatgttcatgaaatgatggttttcagataagagagaccacaatttacgaacacattcaaatcgcttaaaagatttaagaggtaattttgatataat 42445427  T
Q  162 gga 164  Q
    |||    
T  42445426 gga 42445424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 25627435 - 25627341
Alignment:
Q  46 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagattt 140  Q
    |||| |||||| ||| |||| ||| ||||||||  ||  ||||||||||||||||||||||||||   ||||||| ||  |||||| ||||||||    
T  25627435 gatatgaaattattgcggaacatggtcatgaaagaagggttttcaaataagagagaccatgatttcttaacgcatccagaacgcttcaaagattt 25627341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 180
Target Start/End: Original strand, 34379 - 34492
Alignment:
Q  67 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaa 166  Q
    ||||| ||||||| || ||| ||||||||| ||||||||||||| |  |||||   || ||| ||  |||||||||||||||| |||||||||||| |||    
T  34379 atgtttatgaaattaggattctcaaataagtgagaccatgatttacgtacgcaactaaaacgttttgaagatttaagaggcaattttgatagaatgaaaa 34478  T
Q  167 aagcaatatcatca 180  Q
    | |||| |||||||    
T  34479 atgcaagatcatca 34492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 7525013 - 7525065
Alignment:
Q  133 aaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtat 185  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||    
T  7525013 aaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtat 7525065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 7436181 - 7436239
Alignment:
Q  127 cgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtat 185  Q
    ||||| ||||||||||||||||| |||||||||||||| |  |||| ||||||||||||    
T  7436181 cgcttcaaagatttaagaggcaaatttgatagaatggagattgcaacatcatcaggtat 7436239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 7499768 - 7499882
Alignment:
Q  71 tcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagc 170  Q
    |||| |||||||||| |||||||||||||| ||||||||| || |||||  |||  ||||| |||| ||| |  ||||| ||||||| ||||   || ||    
T  7499768 tcataaaatgagtatcttcaaataagagagtccatgatttacatacgcaaccaaaccgcttcaaagtttttaccggcaattttgatacaatgagcaatgc 7499867  T
Q  171 aatatcatcaggtat 185  Q
    |||||||||| ||||    
T  7499868 aatatcatcatgtat 7499882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 179
Target Start/End: Original strand, 51875534 - 51875646
Alignment:
Q  67 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaa 166  Q
    |||||||||||| ||| |||||| |||||||| ||||||||||| || || ||| |||  ||||| ||||||| |||||| |  ||||||||||| || |    
T  51875534 atgttcatgaaacgaggattttcgaataagagtgaccatgatttacatacacatccaaatcgctttaaagattgaagaggtagttttgatagaatcgaga 51875633  T
Q  167 aagcaatatcatc 179  Q
    |  ||||||||||    
T  51875634 agacaatatcatc 51875646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0831 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 2107 - 2169
Alignment:
Q  51 gaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgca 113  Q
    |||||||||| | || || ||||||||||||| || ||||||||| ||||||||||| |||||    
T  2107 gaaattgttgcgaaacattttcatgaaatgaggatcttcaaataaaagagaccatgacttgca 2169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 38630 - 38589
Alignment:
Q  103 catgatttgcaaacgcattcaatacgcttgaaagatttaaga 144  Q
    ||||||||||||| | |||||| |||||||||||||||||||    
T  38630 catgatttgcaaatggattcaaaacgcttgaaagatttaaga 38589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 3368670 - 3368718
Alignment:
Q  62 ggaatatgttcatgaaatgagtattttcaaataagagagaccatgattt 110  Q
    |||| |||| |||||||| ||  ||||||||||||||||||||||||||    
T  3368670 ggaacatgtccatgaaataagggttttcaaataagagagaccatgattt 3368718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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