View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7426_low_2 (Length: 606)
Name: NF7426_low_2
Description: NF7426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7426_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Complemental strand, 42377182 - 42376587
Alignment:
| Q |
1 |
agaagaagacaagaacaagaggaagaaaactcacaagaagcaacatcaagaatcagcatctacaaagcaaacaacaagaaacatcctctgaaaattgttc |
100 |
Q |
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| T |
42377182 |
agaagaagacaagaacaagaggaagaaaactcacaagaagcaacatcaagaatcagcatctacaaagcaaacaacaagaaacatcctctgaaaattgttc |
42377083 |
T |
|
| Q |
101 |
ctcaaacatggattctgttaaggttgttgatgatgtctccatcacaagtaacagtttatgctcaacgccaaaaggtaaaaaatttcggataccagaaatt |
200 |
Q |
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| T |
42377082 |
ctcaaacatggattctgttaaggttgttgatgatgtctccatcacaagtaacagtttatgctcaacgccaaaaggtaaaaaatttcggataccagaaatt |
42376983 |
T |
|
| Q |
201 |
tccacatgtccaccagcaccaaagaaacaaagggtgctttcaaatttctctcttcgtcgatcatttttcgcaacaccagacttggagaaatttttgtgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42376982 |
tccacatgtccaccagcaccaaagaaacaaagggtgctttcaaatttctctcttcgtcgatcatttttcgcaacaccagacttggagaaatttttgtgtg |
42376883 |
T |
|
| Q |
301 |
ttgcacttcaagattctctagcttcatttgtttgctaatcgatatttgtgtaatgagactgcagttgcag------ttgcggaccacaatttagaaccgt |
394 |
Q |
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| T |
42376882 |
ttgcacttcaagattctctagcttcatttgtttgctagtcgatatttgtgtaatgagactgcagttgcagttgcaattgcggaccacaatttagaaccgt |
42376783 |
T |
|
| Q |
395 |
gttcagaactatggattttgaagtgaccattgatattaggggaaagtttttccatcccttaattatttatgatcattttagcttagtagagtttgttagt |
494 |
Q |
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| T |
42376782 |
gttcagaactatggattttgaagtgaccattgatattaggggaaagtttttccatcccttaattatttatgatcattttagcttagtagagtttgttagt |
42376683 |
T |
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| Q |
495 |
gactaaatttagcttggttactctccaactagatttagattttaagcttattttg-nnnnnnnncatatcttatactagtggaagatatatgttat |
589 |
Q |
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| T |
42376682 |
gactaaatttagcttggttacactccaactagatttagattttaagcttattttgtttttttttcatatcttatactagtggaagatatatgttat |
42376587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 470 - 549
Target Start/End: Original strand, 20320820 - 20320899
Alignment:
| Q |
470 |
ttttagcttagtagagtttgttagtgactaaatttagcttggttactctccaactagatttagattttaagcttattttg |
549 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||| |
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| T |
20320820 |
ttttagcttagtagagtttgatagtgactaaatttagcttggttactctccaacgatatttagattttaagctgattttg |
20320899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 470 - 549
Target Start/End: Original strand, 34151565 - 34151644
Alignment:
| Q |
470 |
ttttagcttagtagagtttgttagtgactaaatttagcttggttactctccaactagatttagattttaagcttattttg |
549 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||| |
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| T |
34151565 |
ttttagcttagtagagtttgatagtgactaaatttagcttggttactctccaacgatatttagattttaagctgattttg |
34151644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 24578926 - 24578829
Alignment:
| Q |
149 |
taacagtttatgctcaacgccaaaaggtaaaaaatttcggataccagaaatttccacatgtccaccagcaccaaagaaacaaagggtgctttcaaatt |
246 |
Q |
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||||||| ||| ||||| ||||||||| | |||| | |||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
24578926 |
taacagtgcatgttcaacaccaaaaggtcagaaatataggataccagagatttcaacatgtcctccagcaccaaagaaacaaagggtagtttcaaatt |
24578829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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