View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7426_low_4 (Length: 426)

Name: NF7426_low_4
Description: NF7426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7426_low_4
NF7426_low_4
[»] chr7 (6 HSPs)
chr7 (1-407)||(2257608-2258018)
chr7 (327-407)||(2257357-2257437)
chr7 (24-88)||(10693072-10693136)
chr7 (24-80)||(11888417-11888473)
chr7 (25-88)||(7879710-7879773)
chr7 (24-88)||(48735121-48735185)
[»] chr4 (7 HSPs)
chr4 (25-88)||(47444029-47444092)
chr4 (25-88)||(5648330-5648393)
chr4 (25-88)||(30639451-30639514)
chr4 (25-87)||(23501862-23501924)
chr4 (51-88)||(9832339-9832376)
chr4 (25-86)||(32484307-32484368)
chr4 (24-88)||(44363129-44363193)
[»] chr5 (3 HSPs)
chr5 (26-87)||(20135679-20135740)
chr5 (25-88)||(8169984-8170047)
chr5 (25-88)||(24448962-24449025)
[»] chr3 (4 HSPs)
chr3 (25-88)||(12914035-12914098)
chr3 (55-88)||(46169997-46170030)
chr3 (25-93)||(24851301-24851369)
chr3 (24-88)||(39203608-39203672)
[»] chr2 (2 HSPs)
chr2 (31-86)||(41409936-41409991)
chr2 (25-93)||(26684620-26684688)
[»] chr1 (4 HSPs)
chr1 (25-88)||(50606498-50606561)
chr1 (25-91)||(34725098-34725164)
chr1 (23-88)||(4349733-4349798)
chr1 (31-88)||(4587569-4587626)
[»] chr8 (2 HSPs)
chr8 (22-88)||(17823648-17823714)
chr8 (24-88)||(13160773-13160837)
[»] chr6 (1 HSPs)
chr6 (25-87)||(6808468-6808530)
[»] scaffold0311 (1 HSPs)
scaffold0311 (31-88)||(10882-10939)
[»] scaffold0187 (2 HSPs)
scaffold0187 (31-80)||(10056-10105)
scaffold0187 (31-80)||(20384-20433)


Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 2257608 - 2258018
Alignment:
Q  1 ttgaagtactcttagtcatcaagtaaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccatttagtatgcactta 100  Q
    |||||||||||||| |||||||||||||||||| ||  | || |||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  2257608 ttgaagtactcttaatcatcaagtaaaggacaatccgatacactgaagctcctgcatatacagggtctgggaaggagtcctaccatttggtatgcactta 2257707  T
Q  101 cacttgttgactaaagggcaacccactgcactgatatcagtatgcacttacacttgttgacatgactttctaattttgtt-nnnnnnnnttaatatatgt 199  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||| ||||    
T  2257708 cacttgttgactaaagggcaacccgctgcactgatatcagtatgcacttacacttgttgacatgactttctaattttgttaaaaaaaaattaatacatgt 2257807  T
Q  200 gggtcacactcaatcactattcttatattttagttgtgatttttaaaactttaattgtgttttaagataatggcaaatatattaattttnnnnnnnnngt 299  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||    
T  2257808 gggtcacactcaatcactattcttatgttttagttgtgatttttaaaactttaattgtgttttaagataatggcaaatatattaatttttaaagaaaagt 2257907  T
Q  300 caatttgctaaaattgttgtttttcagaaatagtcttagtacaacatttctgcta---aagacgtagggagtattatatcacaaaataaatatgcatttc 396  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||    
T  2257908 caatttgctagaattgttatttttgagaaatagtcttagtacaacatttctgctaaagaagacgtagggagtagtatatcacaaaataaatatgcatttc 2258007  T
Q  397 cgcatacatat 407  Q
    |||||||||||    
T  2258008 cgcatacatat 2258018  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 2257357 - 2257437
Alignment:
Q  327 aaatagtcttagtacaacatttctgctaaagacgtagggagtattatatcacaaaataaatatgcatttccgcatacatat 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  2257357 aaatagtcttagtacaacatttctgctaaagacgtagggagtattatatctcaaaataaatatgcatttcctcatatatat 2257437  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 10693072 - 10693136
Alignment:
Q  24 taaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    |||||| |||||||||||| |  ||| || |||||| |||||||||||||||||||| |||||||    
T  10693072 taaagggcaacccagtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccattt 10693136  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 11888473 - 11888417
Alignment:
Q  24 taaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcc 80  Q
    |||||| |||||||||||| |||||| |||||||| ||||||||| | |||||||||    
T  11888473 taaagggcaacccagtgcactgaagctcctgcatacacagggtccagaaaggggtcc 11888417  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 7879773 - 7879710
Alignment:
Q  25 aaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    ||||| |||||| ||||| |||||| || |||||  |||||||||||||||||||| |||||||    
T  7879773 aaagggcaacccggtgcactgaagctcccgcatacgcagggtccgggaaggggtcccaccattt 7879710  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 48735121 - 48735185
Alignment:
Q  24 taaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    |||||| |||||| ||||| |  ||| || |||||| |||||||||||||||||||| |||||||    
T  48735121 taaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccattt 48735185  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 47444092 - 47444029
Alignment:
Q  25 aaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    ||||| |||||||||||| |||||| ||||||||| |||||||||||||||||||| |||||||    
T  47444092 aaagggcaacccagtgcactgaagctcctgcatatgcagggtccgggaaggggtcccaccattt 47444029  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 5648393 - 5648330
Alignment:
Q  25 aaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    ||||| |||||||||||| |||||| || |||||  |||||||||||||||||||| |||||||    
T  5648393 aaagggcaacccagtgcactgaagctcccgcatacgcagggtccgggaaggggtcccaccattt 5648330  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 30639514 - 30639451
Alignment:
Q  25 aaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    ||||| |||||||||||| | |||| || |||||| |||||||||||||||||||  |||||||    
T  30639514 aaagggcaacccagtgcactaaagctcccgcatatgcagggtccgggaaggggtctcaccattt 30639451  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 23501924 - 23501862
Alignment:
Q  25 aaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccatt 87  Q
    ||||| |||||| ||||| | |||| || |||||| |||||||||||||||||||| ||||||    
T  23501924 aaagggcaacccggtgcactaaagctcccgcatatgcagggtccgggaaggggtcccaccatt 23501862  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 9832339 - 9832376
Alignment:
Q  51 cctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  9832339 cctgcatatgcagggtccgggaaggggtcccaccattt 9832376  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 32484368 - 32484307
Alignment:
Q  25 aaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccat 86  Q
    ||||| |||||| ||||| | |||| || |||||| |||||||||||||||||||| |||||    
T  32484368 aaagggcaacccggtgcactaaagctcccgcatatgcagggtccgggaaggggtcccaccat 32484307  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 44363129 - 44363193
Alignment:
Q  24 taaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    |||||| |||||| ||||| | |||| || |||||  |||||||||||||||||||| |||||||    
T  44363129 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 44363193  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 20135740 - 20135679
Alignment:
Q  26 aaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccatt 87  Q
    |||| |||||| ||||| |||||| ||||||||| | |||||||||||||||||| ||||||    
T  20135740 aagggcaacccggtgcactgaagctcctgcatatgcggggtccgggaaggggtcccaccatt 20135679  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 8169984 - 8170047
Alignment:
Q  25 aaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    ||||| |||||| ||||| |||| | || |||||| |||||||||||||||||||| |||||||    
T  8169984 aaagggcaacccggtgcactgaaactcccgcatatgcagggtccgggaaggggtcccaccattt 8170047  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 24449025 - 24448962
Alignment:
Q  25 aaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    ||||| |||||| ||||| | |||| ||||||||  |||||||||||||||||||| |||||||    
T  24449025 aaagggcaacccggtgcactaaagctcctgcatacgcagggtccgggaaggggtcccaccattt 24448962  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 12914035 - 12914098
Alignment:
Q  25 aaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    ||||| |||||| |||||||||||| || |||||| ||||||| |||||||||||  |||||||    
T  12914035 aaagggcaacccggtgcattgaagctcccgcatatgcagggtctgggaaggggtctcaccattt 12914098  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 46169997 - 46170030
Alignment:
Q  55 catatacagggtccgggaaggggtcctaccattt 88  Q
    ||||| ||||||||||||||||||||||||||||    
T  46169997 catatgcagggtccgggaaggggtcctaccattt 46170030  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 24851301 - 24851369
Alignment:
Q  25 aaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccatttagtat 93  Q
    ||||| |||||| ||||| | |||| || |||||| |||| ||||||||||||||| ||||||| ||||    
T  24851301 aaagggcaacccggtgcactaaagctcccgcatatgcaggatccgggaaggggtcccaccatttggtat 24851369  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 39203672 - 39203608
Alignment:
Q  24 taaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    |||||| |||||| ||||| | |||| || |||||| || ||||||||||||||||| |||||||    
T  39203672 taaagggcaacccggtgcactaaagctcccgcatatgcaaggtccgggaaggggtcccaccattt 39203608  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 41409991 - 41409936
Alignment:
Q  31 caacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccat 86  Q
    |||||| ||||| |||||| || |||||| |||||||||||||||||||| |||||    
T  41409991 caacccggtgcactgaagctcccgcatatgcagggtccgggaaggggtcccaccat 41409936  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 26684620 - 26684688
Alignment:
Q  25 aaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccatttagtat 93  Q
    ||||||||| || ||||||| |||| || |||||  |||||| ||||||| ||||| ||||||||||||    
T  26684620 aaaggacaatccggtgcattaaagctcccgcatacgcagggttcgggaagaggtcccaccatttagtat 26684688  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 50606561 - 50606498
Alignment:
Q  25 aaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    ||||| |||||| ||||| | |||| || |||||| |||||||||||||||||||| |||||||    
T  50606561 aaagggcaacccggtgcactaaagctcccgcatatgcagggtccgggaaggggtcccaccattt 50606498  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 34725098 - 34725164
Alignment:
Q  25 aaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccatttagt 91  Q
    ||||| |||||| ||||| |  ||| || |||||| |||||||||||||||||||| ||||||||||    
T  34725098 aaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatttagt 34725164  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 4349798 - 4349733
Alignment:
Q  23 gtaaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    ||||||| |||||| ||||| | |||| || |||||  |||||||||||||||||||| |||||||    
T  4349798 gtaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 4349733  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 4587569 - 4587626
Alignment:
Q  31 caacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    |||||| ||||| |||||| || |||||  |||||||||||||||||||| |||||||    
T  4587569 caacccggtgcactgaagctcccgcataggcagggtccgggaaggggtcccaccattt 4587626  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 17823714 - 17823648
Alignment:
Q  22 agtaaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    |||||||| |||||| ||||| | |||| ||||||||| |||||| ||||||||||| | |||||||    
T  17823714 agtaaagggcaacccggtgcactaaagctcctgcatatgcagggttcgggaaggggttccaccattt 17823648  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 13160837 - 13160773
Alignment:
Q  24 taaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    |||||| |||||| | ||| |||||| || |||||  |||||||||||||||||||| |||||||    
T  13160837 taaagggcaacccggcgcactgaagctcccgcatacgcagggtccgggaaggggtcccaccattt 13160773  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 6808530 - 6808468
Alignment:
Q  25 aaaggacaacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccatt 87  Q
    ||||| |||||| ||||| | |||| || ||||| ||||||||||||||||||||| ||||||    
T  6808530 aaagggcaacccggtgcactaaagctcccgcatacacagggtccgggaaggggtcccaccatt 6808468  T

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Target: scaffold0311 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 10939 - 10882
Alignment:
Q  31 caacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcctaccattt 88  Q
    |||||||||||| | |||| || |||||  |||||||||||||||||||| |||||||    
T  10939 caacccagtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 10882  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 10056 - 10105
Alignment:
Q  31 caacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcc 80  Q
    |||||| ||||| || ||| ||||||||| ||||||||||||||||||||    
T  10056 caacccggtgcactggagctcctgcatatgcagggtccgggaaggggtcc 10105  T

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Target: scaffold0187; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 20384 - 20433
Alignment:
Q  31 caacccagtgcattgaagcacctgcatatacagggtccgggaaggggtcc 80  Q
    |||||| ||||| || ||| ||||||||| ||||||||||||||||||||    
T  20384 caacccggtgcactggagctcctgcatatgcagggtccgggaaggggtcc 20433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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