View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7426_low_8 (Length: 331)
Name: NF7426_low_8
Description: NF7426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7426_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 6030694 - 6030479
Alignment:
| Q |
1 |
aaaacaatgaaagtaatgcaattttcattgctgtctactgtgagtctcaaccagtgtagtcatattaatttactggttctttgtccttcacttttgaaaa |
100 |
Q |
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| T |
6030694 |
aaaacaatgaaagtaatgcaattttcattgctgtctactgtgagtctcaaccagtgtagtcatattaatttactggttctttgtccttcacttttgtaaa |
6030595 |
T |
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| Q |
101 |
atagtatagcagtaagacactagagaactttagcaaattatttataaccagaagtcggtagaggtacaaacaccaaacaaattcataccataaaagttac |
200 |
Q |
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| T |
6030594 |
ataag-tagcagtaagacactagagaactttagcaaattatttataaccagaagtcggtagaggtacaaacaccaaacagattcataccataaaagttgc |
6030496 |
T |
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| Q |
201 |
atttattaggaaccttt |
217 |
Q |
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||||||||||||||||| |
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| T |
6030495 |
atttattaggaaccttt |
6030479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 216 - 307
Target Start/End: Complemental strand, 6030285 - 6030193
Alignment:
| Q |
216 |
tttcctataataataagatctttgcatgcaaacatgtctgtttttt-aattgcaaaacgtttcctataataacatctttgaaggaaaaacatt |
307 |
Q |
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| T |
6030285 |
tttcctataataataagatctttgcatgcaaacatgtctgtttttttaattgcaaaacgtttcctatagtaacatctttgaaggaaaaacatt |
6030193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 6030000 - 6029948
Alignment:
| Q |
165 |
tacaaacaccaaacaaattcataccataaaagttacatttattaggaaccttt |
217 |
Q |
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|||||||| |||||||| | ||| |||||||||| |||||||||||||||||| |
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| T |
6030000 |
tacaaacaacaaacaaactgataacataaaagttgcatttattaggaaccttt |
6029948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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