View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7426_low_9 (Length: 305)

Name: NF7426_low_9
Description: NF7426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7426_low_9
NF7426_low_9
[»] chr7 (3 HSPs)
chr7 (1-276)||(8552890-8553165)
chr7 (135-188)||(5177149-5177202)
chr7 (15-94)||(5177216-5177295)
[»] chr4 (1 HSPs)
chr4 (1-279)||(49610567-49610845)
[»] chr8 (11 HSPs)
chr8 (113-279)||(5174499-5174665)
chr8 (133-226)||(5203701-5203794)
chr8 (15-94)||(1797431-1797510)
chr8 (1-95)||(5174710-5174804)
chr8 (113-190)||(6230175-6230252)
chr8 (139-275)||(5193414-5193550)
chr8 (1-95)||(5203859-5203953)
chr8 (26-94)||(5170507-5170575)
chr8 (20-95)||(6230297-6230372)
chr8 (133-233)||(1797519-1797619)
chr8 (241-276)||(5170330-5170365)
[»] chr6 (1 HSPs)
chr6 (135-190)||(16472299-16472354)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 8552890 - 8553165
Alignment:
Q  1 ctcaagacttgggacatctatatatacctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatgagtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8552890 ctcaagacttgggacatctatatatacctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatgagtttt 8552989  T
Q  101 acgccgcctcccgggctcaaaactgaacaatgcttcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgtccatcttcca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8552990 acgccgcctcccgggctcaaaactgaacaatgcttcaaagttatatgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgttcatcttcca 8553089  T
Q  201 aaagaacaatccacaatgacaatactctcaatgnnnnnnncttaattgactgattcatgaatgcttgatcaactct 276  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  8553090 aaagaacaatccacaatgacaatactctcaatgaaaaaaacttaattgactgattcatgaatgcttgatcaactct 8553165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 5177202 - 5177149
Alignment:
Q  135 tcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcat 188  Q
    |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  5177202 tcaaagttatatgttcaatcaaaggacaacaagaaatgagatgttcaattgcat 5177149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 5177295 - 5177216
Alignment:
Q  15 catctatatatacctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatg 94  Q
    |||| ||||||||||| || ||||| | ||| | |||||||||||||||  |||||||||| ||||||||||||||||||    
T  5177295 catcaatatatacctcctggattccttcaactttaactgtcttgagcttaagtagaccatgaatgctcaaagacttcatg 5177216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 49610845 - 49610567
Alignment:
Q  1 ctcaagacttgggacatctatatatacctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatgagtttt 100  Q
    |||||||| |||| |||| | ||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  49610845 ctcaagacatggggcatcgacataaacctcttgtattccttgaacatcaactgtcttgagctttggtagaccaagcatgctcaaacacttcatgagtttt 49610746  T
Q  101 acgccgcctcccgggctcaaaactgaacaatgcttcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgtccatcttcca 200  Q
      |||||||||  ||||||| ||  ||||| | ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||  ||| | |||    
T  49610745 gtgccgcctccaaggctcaacaccaaacaacgattcaaagttatatgttcaatcaaaggacaacaagaaatgagatgttcaattgcatgctcatttccca 49610646  T
Q  201 aaagaacaatccacaatgacaatactctcaatgnnnnnnncttaattgactgattcatgaatgcttgatcaactctgat 279  Q
    |||| ||   |||||||||||||||| |||| |       |||||||||||||| ||||||||||||||||| ||||||    
T  49610645 aaaggacttcccacaatgacaatactatcaacgaaaaaaacttaattgactgatgcatgaatgcttgatcaattctgat 49610567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 279
Target Start/End: Complemental strand, 5174665 - 5174499
Alignment:
Q  113 gggctcaaaactgaacaatgcttcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgtccatcttccaaaagaacaatcc 212  Q
    |||||||| |||||||||  |||||||||||| |||||||| |||||||||| |||||| |||| ||||||||||||  ||| |||  |||| ||   ||    
T  5174665 gggctcaacactgaacaacacttcaaagttatatgttcaatcaaaggacaacgagaaatcagattctcaattgcatgctcatattcacaaaggacctccc 5174566  T
Q  213 acaatgacaatactctcaatgnnnnnnncttaattgactgattcatgaatgcttgatcaactctgat 279  Q
    |||||||||||||||||||||       ||||||||| | ||||||||||| |||||||||||||||    
T  5174565 acaatgacaatactctcaatgagaaacacttaattgaattattcatgaatgattgatcaactctgat 5174499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 5203794 - 5203701
Alignment:
Q  133 cttcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgtccatcttccaaaagaacaatccacaatgacaatact 226  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||  | |||| |||  ||||||||||||||||    
T  5203794 cttcaaagttatatgttcaatcaaaggacaacaagaaatgagatgctcaattgcatgttcatctctcgaaaggacagcccacaatgacaatact 5203701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 1797431 - 1797510
Alignment:
Q  15 catctatatatacctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatg 94  Q
    |||| ||||||||||| || ||||| | |||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  1797431 catcaatatatacctcctggattccttcaacatcaactgtcttgagcttaagtagaccatgcatgctcaaagacttcatg 1797510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 5174804 - 5174710
Alignment:
Q  1 ctcaagacttgggacatctatatatacctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatga 95  Q
    ||||||||  ||| |||| ||||| |||||||||||||| ||||||||||||||||| ||||||| || |||| ||||||||||||| |||||||    
T  5174804 ctcaagacacggggcatcaatataaacctcttgtattccttgaacatcaactgtcttcagctttgataaaccacgcatgctcaaagatttcatga 5174710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 6230252 - 6230175
Alignment:
Q  113 gggctcaaaactgaacaatgcttcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgt 190  Q
    |||||||| | |||||||| | |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||    
T  6230252 gggctcaacattgaacaatccctcaaagttatatgttcaattaaaggacaacaagaaatgagatgttcaattgcatgt 6230175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 5193550 - 5193414
Alignment:
Q  139 agttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgtccatcttccaaaagaacaatccacaatgacaatactctcaatgnnnnn 238  Q
    |||||| |||||||| ||||||||||||||||||||||| || ||||||||| | |||  || ||| |||  |||||||||||||||||| | ||         
T  5193550 agttatatgttcaatcaaaggacaacaagaaatgagatgttcgattgcatgttcgtctctcacaaggacaccccacaatgacaatactcttagtgagaaa 5193451  T
Q  239 nncttaattgactgattcatgaatgcttgatcaactc 275  Q
       |||||||| |||||||||||||||  ||||||||    
T  5193450 aatttaattgaatgattcatgaatgctgtatcaactc 5193414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 5203953 - 5203859
Alignment:
Q  1 ctcaagacttgggacatctatatatacctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatga 95  Q
    ||||||||  ||| |||| ||||| ||||| |||||||| ||||||||||||||||| | |||  |||||||||||||  |||||||||||||||    
T  5203953 ctcaagacacggggcatcaatataaacctcctgtattccttgaacatcaactgtcttcaacttaagtagaccatgcatattcaaagacttcatga 5203859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 5170575 - 5170507
Alignment:
Q  26 acctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatg 94  Q
    ||||||| |||||| ||||||||||||||||| |||||| |||| ||||| ||||||||||| ||||||    
T  5170575 acctcttttattccttgaacatcaactgtctttagctttagtaggccatgtatgctcaaagatttcatg 5170507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 6230372 - 6230297
Alignment:
Q  20 atatatacctcttgtattccatgaacatcaactgtcttgagctttggtagaccatgcatgctcaaagacttcatga 95  Q
    ||||| |||||||||||||| ||||||||||| ||||| | |||  ||||||||| ||| ||||||||||| ||||    
T  6230372 atataaacctcttgtattccttgaacatcaaccgtcttcaacttaagtagaccatccatactcaaagacttgatga 6230297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 1797519 - 1797619
Alignment:
Q  133 cttcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgtccatcttccaaaagaacaatccacaatgacaatactctcaat 232  Q
    |||||||||||| |||||||| || |||||||||||||| | ||| |||||| ||||| | |||| | |||  |||  ||||||||||| |||||| |||    
T  1797519 cttcaaagttatatgttcaatcaacggacaacaagaaataaaatgttcaattacatgttcgtctttcgaaacgacatcccacaatgacagtactcttaat 1797618  T
Q  233 g 233  Q
    |    
T  1797619 g 1797619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 276
Target Start/End: Complemental strand, 5170365 - 5170330
Alignment:
Q  241 cttaattgactgattcatgaatgcttgatcaactct 276  Q
    ||||||||| ||||||||||||||||||||||||||    
T  5170365 cttaattgaatgattcatgaatgcttgatcaactct 5170330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 16472354 - 16472299
Alignment:
Q  135 tcaaagttatttgttcaatgaaaggacaacaagaaatgagatgctcaattgcatgt 190  Q
    |||||||||| |||||||| |||||||||  ||||||||  |||||||||||||||    
T  16472354 tcaaagttatatgttcaatcaaaggacaatgagaaatgaattgctcaattgcatgt 16472299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University