View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7427_high_1 (Length: 648)

Name: NF7427_high_1
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7427_high_1
NF7427_high_1
[»] chr8 (1 HSPs)
chr8 (1-631)||(42399375-42400005)


Alignment Details
Target: chr8 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 1 - 631
Target Start/End: Complemental strand, 42400005 - 42399375
Alignment:
Q  1 ccaaggtaagcattcatatcaatagtgtttctatatcttccttgagcaataggagtgatatgcttgtaatgtgacattctgtccttccataattcattgt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42400005 ccaaggtaagcattcatatcaataatgtttctatatcttccttgagcaataggagtgatatgcttgtaatgtgacattctgtccttccataattcattgt 42399906  T
Q  101 ccttttgaaatttctctgcagtgatgcttggtattaaaccactactaattctaggaggtactgcaaaggcacgtcttggccatttttctagttcccctcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42399905 ccttttgaaatttctctgcagtgatgcttggtattaaaccactactaattctaggaggtactgcaaaggcacgtcttggccatttttctagttcccctcc 42399806  T
Q  201 agctactttgcttgggctggtaacttctggtaatggagttatgcacttttccatattttggtacctttttaaatgtaaatcaaacagagaaaaatggtaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42399805 agctactttgcttgggctggtaacttctggtaatggagttatgcacttttccatattttggtacctttttaaatgtaaatcaaacagagaaaaatggtaa 42399706  T
Q  301 acaaaatatatcaaattttaaacatgcaaagggatcttaccatatatcaactgtagaaatgatataaagaatacttaccaagccatgtcaggattatcag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42399705 acaaaatatatcaaattttaaacatgcaaagggatcttaccatatatcaactgtagaaatgatataaagaatacttaccaagccatgtcaggattatcag 42399606  T
Q  401 actggcaaatatgtggtgttttaaagacttgtttagtttgtacacattcaaggtgatttttaggcttttgccaaatggaaaggtcatctttctcaacaac 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42399605 actggcaaatatgtggtgttttaaagacttgtttagtttgtacacattcaaggtgatttttaggcttttgccaaatggaaaggtcatctttctcaacaac 42399506  T
Q  501 tttcttccaacatatgcgtttggcaacttcctctatggaatcttgctcttgctttaaatcctcttcagttctttcccagcccctccagtatttcttccat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42399505 tttcttccaacatatgcgtttggcaacttcctctatggaatcttgctcttgctttaaatcctcttcagttctttcccagcccctccagtatttcttccat 42399406  T
Q  601 ctaataggtgggccagaaagaatccaataac 631  Q
    |||||||||||||||||||||||||||||||    
T  42399405 ctaataggtgggccagaaagaatccaataac 42399375  T

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