View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7427_high_11 (Length: 388)
Name: NF7427_high_11
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 27 - 372
Target Start/End: Complemental strand, 32016905 - 32016550
Alignment:
| Q |
27 |
atccatgatttttctccaaagtcaatcccatgattttcctccaattcttagaaataacactacaatgcaagaaaagatgcgtcgaagattctacctaagc |
126 |
Q |
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| T |
32016905 |
atccatgatttttctccaaagtcaatcccatgattttcctccaattcttagaaataacactacaatgcaagaaaatatgtgttgaagattctaccgaagc |
32016806 |
T |
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| Q |
127 |
atcgcaaaaaacacaattggtcgaacttttcgggtccaataaattctgaatggcaagattcctcccgtaggaatccgatcacg----------caagaaa |
216 |
Q |
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| T |
32016805 |
atcgcaaaaaacacaattggtcgaacttttcggatccaataaattctgaatggcaagatttctcctgtaggaatccgattacgaagaagtttccaagaaa |
32016706 |
T |
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| Q |
217 |
aagccacaacttttgacggggccgggcttttccaaaagtaatcaaacaccttttcctccacaggattcaaaccatcctctaaaattaacaacccctccaa |
316 |
Q |
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| T |
32016705 |
aagccacaacttttgacggggctgggcttttccaaaggtaaccaaacacctcttcctccaccggattcaaaccatcctctaaaattaacaacccctccaa |
32016606 |
T |
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| Q |
317 |
caccttgtacactgagcttaccgaaatgactccatcatcctcaaatctcaacttcc |
372 |
Q |
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| T |
32016605 |
caccttgtacattgagcttaccgaaatgactccatcatcctcaaatctcaacttcc |
32016550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 7425105 - 7425062
Alignment:
| Q |
209 |
gcaagaaaaagccacaacttttgacggggccgggcttttccaaa |
252 |
Q |
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| T |
7425105 |
gcaagaaaaagccacaacttttgaccgagccgggctcttccaaa |
7425062 |
T |
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