View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7427_high_14 (Length: 363)
Name: NF7427_high_14
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_high_14 |
 | |
|
| [»] scaffold1005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 11504602 - 11504270
Alignment:
| Q |
20 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11504602 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacaa |
11504503 |
T |
|
| Q |
120 |
aggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgag |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11504502 |
aggccccagtagtgcctcaaaccccggtgattacggattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgag |
11504403 |
T |
|
| Q |
220 |
agaatttgccatccttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11504402 |
agaatttgccatccttgtaatctttctttctgttcaaaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactc |
11504303 |
T |
|
| Q |
320 |
tgcagcactcaatttaccagccctcatgttcat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11504302 |
tgcagcactcaatttaccagccctcatgttcat |
11504270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 11511996 - 11511664
Alignment:
| Q |
20 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11511996 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacaa |
11511897 |
T |
|
| Q |
120 |
aggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgag |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11511896 |
aggccccagtagtgcctcaaaccccggtgattacggattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgag |
11511797 |
T |
|
| Q |
220 |
agaatttgccatccttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11511796 |
agaatttgccatccttgtaatctttctttctgttcaaaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactc |
11511697 |
T |
|
| Q |
320 |
tgcagcactcaatttaccagccctcatgttcat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11511696 |
tgcagcactcaatttaccagccctcatgttcat |
11511664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 11519372 - 11519040
Alignment:
| Q |
20 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11519372 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacaa |
11519273 |
T |
|
| Q |
120 |
aggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgag |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11519272 |
aggccccagtagtgcctcaaaccccggtgattacggattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgag |
11519173 |
T |
|
| Q |
220 |
agaatttgccatccttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11519172 |
agaatttgccatccttgtaatctttctttctgttcaaaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactc |
11519073 |
T |
|
| Q |
320 |
tgcagcactcaatttaccagccctcatgttcat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11519072 |
tgcagcactcaatttaccagccctcatgttcat |
11519040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 11526777 - 11526445
Alignment:
| Q |
20 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11526777 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacaa |
11526678 |
T |
|
| Q |
120 |
aggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgag |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11526677 |
aggccccagtagtgcctcaaaccccggtgattacggattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgag |
11526578 |
T |
|
| Q |
220 |
agaatttgccatccttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11526577 |
agaatttgccatccttgtaatctttctttctgttcaaaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactc |
11526478 |
T |
|
| Q |
320 |
tgcagcactcaatttaccagccctcatgttcat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11526477 |
tgcagcactcaatttaccagccctcatgttcat |
11526445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 11534187 - 11533855
Alignment:
| Q |
20 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11534187 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacga |
11534088 |
T |
|
| Q |
120 |
aggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgag |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11534087 |
aggccccagtagtgcctcaaaccccggtgattacggattttcttgagtctctcaagatcatccctgagcttcctgtcaagttgattggatacaacttgag |
11533988 |
T |
|
| Q |
220 |
agaatttgccatccttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
11533987 |
agaatttgccatccttgtaatctttctttctgttcaaaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaattc |
11533888 |
T |
|
| Q |
320 |
tgcagcactcaatttaccagccctcatgttcat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11533887 |
tgcagcactcaatttaccagccctcatgttcat |
11533855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 11497275 - 11496943
Alignment:
| Q |
20 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11497275 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctatagtcgtggtatgctgaccacgaacacga |
11497176 |
T |
|
| Q |
120 |
aggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgag |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
11497175 |
aggccccagtagtgcctcaaaccccggtgattacggattttcttgagtctctcaggatcatccctcagcttcatgtcaagttgattggatacaagttgag |
11497076 |
T |
|
| Q |
220 |
agaatttgccatccttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11497075 |
agaatttgccatccttgtaatctttctttctgttcaaaaaccaatctggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactc |
11496976 |
T |
|
| Q |
320 |
tgcagcactcaatttaccagccctcatgttcat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11496975 |
tgcagcactcaatttaccagccctcatgttcat |
11496943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 11541604 - 11541272
Alignment:
| Q |
20 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11541604 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacga |
11541505 |
T |
|
| Q |
120 |
aggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgag |
219 |
Q |
| |
|
|||| ||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11541504 |
aggccccagttgtgcctcaaaccccgatgattacggattttcttgagtctctcaagatcatccctgaatttcatgtcaagttgattggatacaacttgag |
11541405 |
T |
|
| Q |
220 |
agaatttgccatccttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactc |
319 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11541404 |
aaaatttgccatccttgtaatctttctttctgttcaaaaaccaatctggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactc |
11541305 |
T |
|
| Q |
320 |
tgcagcactcaatttaccagccctcatgttcat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11541304 |
tgcagcactcaatttaccagccctcatgttcat |
11541272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1005 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: scaffold1005
Description:
Target: scaffold1005; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 2747 - 2415
Alignment:
| Q |
20 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2747 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgctgaccacgaacacaa |
2648 |
T |
|
| Q |
120 |
aggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgag |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2647 |
aggccccagtagtgcctcaaaccccggtgattacggattttcttgagtctctcaagatcatccctgaatttcatgtcaagttgattggatacaacttgag |
2548 |
T |
|
| Q |
220 |
agaatttgccatccttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
2547 |
agaatttgccatccttgtaatctttctttctgttcaaaaaccaatttggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaattc |
2448 |
T |
|
| Q |
320 |
tgcagcactcaatttaccagccctcatgttcat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2447 |
tgcagcactcaatttaccagccctcatgttcat |
2415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 41556548 - 41556206
Alignment:
| Q |
20 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtca----------gcctgtagtcgtggtatgctgacc |
109 |
Q |
| |
|
||||||||||||||||||||| || |||| || ||||||||||||||||| |||||||| ||| ||| |||||| ||||||||||||| |
|
|
| T |
41556548 |
tcaaaatcatctaatctccaagtcaaaacataacagcttaacgcttctttgacacaccaactgtctttcctctgcggccagtagtcttggtatgctgacc |
41556449 |
T |
|
| Q |
110 |
acgaacacgaaggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggat |
209 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || || |||||||| || |||| ||||||||| | ||||||||| ||||||||||||| |||||||||| |
|
|
| T |
41556448 |
acgaacacgaaggccccagtagtgcctcaatccacgatgattacggatcttctcgagtctctccaaatcatccctcagcttcatgtcaaattgattggat |
41556349 |
T |
|
| Q |
210 |
acaacttgagagaatttgccatccttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatat |
309 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41556348 |
acaacttgagagaatttcccatccttgtaatccttctttctgttcaaaaaccaatctggaaccttgaattgacgaggattcgcaaccactatcataatat |
41556249 |
T |
|
| Q |
310 |
tactcaactctgcagcactcaatttaccagccctcatgttcat |
352 |
Q |
| |
|
|| ||||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
41556248 |
tatccaactctgcagcacttaattcaccagccctcttgttcat |
41556206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 159 - 343
Target Start/End: Complemental strand, 44179962 - 44179778
Alignment:
| Q |
159 |
ttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttcaaaa |
258 |
Q |
| |
|
|||||||||||||| | |||||| || | ||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
44179962 |
ttcttgagtctctccaaatcatctctcaacttcatgtcgagttgattggagacaacctgagagaatttcccatccttgtaatccttctttctgttcaaaa |
44179863 |
T |
|
| Q |
259 |
accaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaatttaccagccct |
343 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
44179862 |
accaatctggaaccttaaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaattcaccagccct |
44179778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 159 - 343
Target Start/End: Complemental strand, 44207093 - 44206909
Alignment:
| Q |
159 |
ttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttcaaaa |
258 |
Q |
| |
|
|||||||||||||| | |||||| || | ||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
44207093 |
ttcttgagtctctccaaatcatctctcaacttcatgtcgagttgattggagacaacctgagagaatttcccatccttgtaatccttctttctgttcaaaa |
44206994 |
T |
|
| Q |
259 |
accaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaatttaccagccct |
343 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
44206993 |
accaatctggaaccttaaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaattcaccagccct |
44206909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 44180965 - 44180824
Alignment:
| Q |
20 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagt----------cagcctgtagtcgtggtatgctgacc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||| |
|
|
| T |
44180965 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacggtctttcccctgcggcctgtagtcttggtatgctgacc |
44180866 |
T |
|
| Q |
110 |
acgaacacgaaggcgccagtagtgcctcaaaccccggtgatt |
151 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44180865 |
acgaacacgaaggccccagtagtgcctcaaaccccggtgatt |
44180824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 44208189 - 44208046
Alignment:
| Q |
20 |
tcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtca----------gcctgtagtcgtggtatgctgacc |
109 |
Q |
| |
|
||||||||||||||||||||| || |||| || ||||||||||||||||| |||||||| ||| ||| |||||| ||||||||||||| |
|
|
| T |
44208189 |
tcaaaatcatctaatctccaagtcaaaacataacagcttaacgcttctttgacacaccaactgtctttcctctgcggccagtagtcttggtatgctgacc |
44208090 |
T |
|
| Q |
110 |
acgaacacgaaggcgccagtagtgcctcaaaccccggtgattac |
153 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || ||||||| |
|
|
| T |
44208089 |
acgaacacgaaggccccagtagtgcctcaaaccacgatgattac |
44208046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 158 - 297
Target Start/End: Original strand, 4860380 - 4860519
Alignment:
| Q |
158 |
tttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttcaaa |
257 |
Q |
| |
|
||||||||||||||| | || ||| || | ||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||| || |||||| |
|
|
| T |
4860380 |
tttcttgagtctctccaaattatctctcaacttcatgtcaagttggttggagacaacttgagaaaattttccatccttgtaatccttcttcctattcaaa |
4860479 |
T |
|
| Q |
258 |
aaccaatctggaagcttgaattgacgaggattcgcaacca |
297 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4860480 |
aaccaatctggaaccttgaattgacgaggattcgcaacca |
4860519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 176 - 307
Target Start/End: Complemental strand, 14927273 - 14927142
Alignment:
| Q |
176 |
atcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgtaatctttctttctgttcaaaaaccaatctggaagcttg |
275 |
Q |
| |
|
||||||||| | ||||||||| |||||||| || ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| || | |||| |
|
|
| T |
14927273 |
atcatccctcaacttcatgtccagttgatttgaaacaacttgagaaaacttgccatccttgtaatccttctttctgttcaaaaaccaatcagggaccttg |
14927174 |
T |
|
| Q |
276 |
aattgacgaggattcgcaaccactgtcataat |
307 |
Q |
| |
|
||||| | ||| || |||||||| |||||||| |
|
|
| T |
14927173 |
aattgcctagggttggcaaccacagtcataat |
14927142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 14929251 - 14929190
Alignment:
| Q |
90 |
gtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgatt |
151 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| | |||||| || |||||||| |||||||| |
|
|
| T |
14929251 |
gtagtcttggtatgctgtccacgaacacgaagaccccagtaatgtctcaaacctcggtgatt |
14929190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 45048279 - 45048329
Alignment:
| Q |
90 |
gtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaa |
140 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
45048279 |
gtagtcttggtatgctgaccacgagcacgaaggccacagtagtgcctcaaa |
45048329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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