View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7427_high_2 (Length: 612)
Name: NF7427_high_2
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 38 - 596
Target Start/End: Original strand, 28435323 - 28435881
Alignment:
| Q |
38 |
tcaaaaacaaactagtgatttacattctatcnnnnnnnnnnnnntataacactttaaatatcattcatttgcagaggcttactctgaagtgggattcttt |
137 |
Q |
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| T |
28435323 |
tcaaaaacaaactagtgatttacattctatcaaaaaaataaaaatataacactttaaatatcattcatttgcagaggcttactctgaagtgggattcttt |
28435422 |
T |
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| Q |
138 |
ttatacaacaaatgcaaatatagtgtgtggccggcttcacttactacaaatggaaaccaaaatctcctaatcaacaaattcggtttaaaaacggatgaca |
237 |
Q |
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| T |
28435423 |
ttatacaacaaatgcaaatatagtgtgtggccggcttcacttactacaaatggaaaccaaaatctcctaatcaacaaattcggtttaaaaacggatgaca |
28435522 |
T |
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| Q |
238 |
agtctacagtcatggctcctaccacatggagtggtcacttttggggccgaacagtctgcaaaacggattcagaaacagaaaacttcccatgtgttaccgg |
337 |
Q |
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| T |
28435523 |
agtctacagtcatgtctcctaccacatggagtggtcatttttggggccgaacggtctgcaaaacggattcagcaacagaaaacttctcatgtgttaccgg |
28435622 |
T |
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| Q |
338 |
agattgtggtaccgggaaggtggaatgcgatataaacaaaggcatgtcacctgcaacgcgcgctgaatttcgtttaggagacaatggacttgatttttat |
437 |
Q |
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| T |
28435623 |
agattgtggtaccgggaaggtggaatgcgatataaacaaaggcatgtcgcctgcaacgcgcgctgaatttcgtttaggagacgatggacttgatttttat |
28435722 |
T |
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| Q |
438 |
accgttaatgtcgtagaaggtttcaacatccccatagcagtgactcctatgggtgcttctggtgagaatctcaattgcagcagcgcgggttgccctgcaa |
537 |
Q |
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| T |
28435723 |
accgttaatgtcgtagaaggtttcaacatccccatagcagtgactcctatgagtgcttctggtgagaatctcaattgcagcagcgcgggttgccctgcaa |
28435822 |
T |
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| Q |
538 |
atataaatactatgtgtccgacagagcttaaggtgatggaaaatgaggatgtggtcgct |
596 |
Q |
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| T |
28435823 |
atataaatactatgtgtccgacagagcttaaggtgatggaaaatgaggatgtagtcgct |
28435881 |
T |
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