View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7427_high_20 (Length: 300)
Name: NF7427_high_20
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 102 - 282
Target Start/End: Complemental strand, 13771196 - 13771016
Alignment:
| Q |
102 |
ggtcaaagaaaaattaaatgtgtatttatttagtgtaaagtgtatttttgaggtgtcatgtgatgataacgcaatgaatactatattatttgtgtgctgc |
201 |
Q |
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| T |
13771196 |
ggtcaaagaaaaattaaatgtgtatttattttgtgtaaagtgtatttttgaggtgtcacgtgatgataacgcaatgagtaatatactatttgtgtgatgc |
13771097 |
T |
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| Q |
202 |
agtggtctcatgtgacaatgccgagaagaaacaaagtttggtaactgcagagaaaggtaagaagagcaccggaggcaaaag |
282 |
Q |
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| T |
13771096 |
agtggtctcatgtgacaatgttgagaagaaacaaagcttggtaactgtggagaaaggtaagaaaagcaccggaggcaaaag |
13771016 |
T |
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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 4957456 - 4957546
Alignment:
| Q |
106 |
aaagaaaaattaaatgtgtatttatttagtgtaaagtgtatttttgaggtgtcatgtgatgataacgcaatgaa-tactatattatttgtgtg |
197 |
Q |
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| T |
4957456 |
aaagaaaaatgaaatgtgtatttatctagtgtaaa--gtatttttgcggtgtcacgtgatgataacgcaataaagtactatacaatttgtgtg |
4957546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 4958144 - 4958209
Alignment:
| Q |
210 |
catgtgacaatgccgagaagaaacaaagtttggtaactgcagagaaaggtaagaagagcaccggag |
275 |
Q |
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| T |
4958144 |
catgtgacaatgctgaaaagaaacaaagcttggtaactgtagagaagggtaagaagagcactggag |
4958209 |
T |
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