View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7427_high_21 (Length: 291)
Name: NF7427_high_21
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_high_21 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 156 - 291
Target Start/End: Complemental strand, 2579900 - 2579765
Alignment:
| Q |
156 |
tcaagagaaatggtttgactaactggtatcaatgttgacgtattaacaagtttaagcacaataggcacaactttataagaactagtaaaggtgacatctc |
255 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2579900 |
tcaagagaaatggtttgactaattggtatcaatgttgacgtattaacaagtttaagcacaataggcacaactttataagaactagtaaaggtgacatctc |
2579801 |
T |
|
| Q |
256 |
aatatatgactaatatgaaagtaattcaccgtcaac |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
2579800 |
aatatatgactaatatgaaagtaattcaccgtcaac |
2579765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 2580080 - 2579942
Alignment:
| Q |
18 |
gctaactcttgcatgttgttttgttgttggagttttagtagggaaacttgttgctatttgatcaaaaggtggagttatactcattgtcatgtatggaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2580080 |
gctaactcttgcatgttgttttgttgttggagttttagtagggaaacttgttgctatttgatcaaaaggtggagttatactcattgtcatgtatggaaaa |
2579981 |
T |
|
| Q |
118 |
tttctaggtagaaaagaatatcttttgattccatgagtt |
156 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
2579980 |
tttctaggtagaaaataatatattttgattccatgagtt |
2579942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University