View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7427_high_24 (Length: 271)
Name: NF7427_high_24
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_high_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 1000569 - 1000783
Alignment:
| Q |
17 |
ttagaaatggcagtaactagtgatgattttcttgttcctggaggaccatagagcaaatagcctatcttccaaggcttaccaatttttgcataatactctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1000569 |
ttagaaatggcagtaactagtgatgattttcctgttcctggaggaccatagaacaaatagcctatcttccaaggcttaccaatttttgcataatactctt |
1000668 |
T |
|
| Q |
117 |
tagccttactgaatgtaacaagatcatcaacaatctctttcttcttttaggattcattgcaattgtttcaaagaagatggatgttcaaatatcacatgac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1000669 |
tagccttactgaatgtaacaagatcatcaacaatctatttcttcttttaggattcattgcaattgtttcaaagaagatggatgttcaaatataacatgac |
1000768 |
T |
|
| Q |
217 |
tccatttacctctcc |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1000769 |
tccatttacctctcc |
1000783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 6968404 - 6968148
Alignment:
| Q |
17 |
ttagaaatggcagtaactagtgatgattttcttgttcctggaggaccatagagcaaatagcctatcttccaaggcttaccaatttttgcataatactctt |
116 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6968404 |
ttagcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctctcttccaaggcttgccaatttttgcataatactctt |
6968305 |
T |
|
| Q |
117 |
tagccttactgaatgtaacaagatcatcaacaatctctttcttc-ttttaggattcattgcaattgtttcaaa-gaagatggatgttcaaatatcacatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
6968304 |
tagccttactgaatgtaacaagatcatcaacaatctctttcttctttttaggactcattgcaattgtttcaaacgaagacggatgttcaaatatcacatg |
6968205 |
T |
|
| Q |
215 |
actccatttacctctcctttcatattcactatcacctgtgcaatttgtgtaaagctt |
271 |
Q |
| |
|
|||||| ||||||| |||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
6968204 |
actccacttacctcccctttcatattcaccattacctgtgcaatttgtgtaaagctt |
6968148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University