View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7427_high_27 (Length: 249)
Name: NF7427_high_27
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4328922 - 4328686
Alignment:
| Q |
1 |
cacaacgatcaaagacaccaatttcaacactaacattttcatgtgttgttaacctactaagnnnnnnnnnnnagagttgacctactacgttgactatata |
100 |
Q |
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| T |
4328922 |
cacaaagatcaaagacaccaatttcaacattaacattttcatgtgttgttaacctactaagtttttttttttagagttgacctactacgttgactgtata |
4328823 |
T |
|
| Q |
101 |
tgttatttttgaaggattcttagttgactataatgttaatg-tgccactgccagggtggtgtaattataatgggccattttggtccctatctctttcatt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4328822 |
tgttatttttgaaggattcttagttgactataatgttaatgatg----tgccagggtggtgtaattataatgggccattttggtccctatctctttcatt |
4328727 |
T |
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| Q |
200 |
ttccttgaatccttaaccccccaaatatgttagtttcttct |
240 |
Q |
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| T |
4328726 |
ttccttgaatccttaaccccccaaatatgttagtttcttct |
4328686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 4332144 - 4332049
Alignment:
| Q |
148 |
tgccagggtggtgtaattata--atgggccattttggtccctatc-tctttcattttccttgaatccttaaccccccaaatatgttagtttcttct |
240 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| || ||||||||||||| ||||||||| ||||||||| |
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| T |
4332144 |
tgccagggtggtgtaattatatgatggcccattttggtccctatcatctttcattttctttaaatccttaacccctcaaatatgtcggtttcttct |
4332049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 134
Target Start/End: Complemental strand, 4332221 - 4332186
Alignment:
| Q |
99 |
tatgttatttttgaaggattcttagttgactataat |
134 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
4332221 |
tatgttgtttttgaaggattcttagttgactataat |
4332186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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