View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7427_high_32 (Length: 232)

Name: NF7427_high_32
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7427_high_32
NF7427_high_32
[»] chr4 (2 HSPs)
chr4 (1-213)||(2899244-2899456)
chr4 (1-213)||(2885075-2885287)
[»] chr2 (3 HSPs)
chr2 (9-196)||(44224641-44224828)
chr2 (9-133)||(44212538-44212662)
chr2 (9-196)||(44235451-44235638)
[»] chr7 (2 HSPs)
chr7 (4-181)||(39576462-39576639)
chr7 (96-196)||(39549512-39549612)
[»] chr3 (1 HSPs)
chr3 (59-164)||(49771134-49771239)
[»] chr1 (1 HSPs)
chr1 (63-127)||(2150569-2150633)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2899456 - 2899244
Alignment:
Q  1 ttatgcttatgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| |||||    
T  2899456 ttatgcttatgtttaatggattggctgaactttcaatgaccattgcgaagcttcctagtttctacaagcaaagagaccttctgttttttccttcatgggc 2899357  T
Q  101 atattctatacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatccggat 200  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2899356 atatgctatacctacatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatccgaat 2899257  T
Q  201 gttacgaggtaaa 213  Q
    |||||||||||||    
T  2899256 gttacgaggtaaa 2899244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 2885075 - 2885287
Alignment:
Q  1 ttatgcttatgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggc 100  Q
    ||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| |||||    
T  2885075 ttatgattatgtttaatggaatggccgaactttcaatgaccattgctaagcttcctagtttctacaagcaaagagaccttctgttttttccttcatgggc 2885174  T
Q  101 atattctatacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatccggat 200  Q
    |||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||  ||    
T  2885175 atatgctatacctacatggatcctcaagattcctattacctttctggaagttgctgcttgggtttttctcacctattacgtaataggattcgatccaaat 2885274  T
Q  201 gttacgaggtaaa 213  Q
    |||||||||||||    
T  2885275 gttacgaggtaaa 2885287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 44224828 - 44224641
Alignment:
Q  9 atgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggcatattcta 108  Q
    |||||||||||| || ||||  |||| ||||||||||| |||||||||  || |||||||||| ||||||||||||||||||| || ||||||||| |||    
T  44224828 atgtttaatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgcta 44224729  T
Q  109 tacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatcc 196  Q
    | ||| | ||||| |||||||||||  || ||||  |||||||| || ||||||| || || ||||| ||||| || ||||| |||||    
T  44224728 ttccttcgtggattctcaagattcccgtttcattaatggaagtttctctttgggtgtttcttacctactatgttattggatttgatcc 44224641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 44212662 - 44212538
Alignment:
Q  9 atgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggcatattcta 108  Q
    |||||||||||| || ||||  |||| ||||||||||| |||||||||  || |||||||||| ||||||||||||||||||| || ||||||||| |||    
T  44212662 atgtttaatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgcta 44212563  T
Q  109 tacctgcatggatcctcaagattcc 133  Q
    | ||| ||||||| |||||||||||    
T  44212562 ttccttcatggattctcaagattcc 44212538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 44235638 - 44235451
Alignment:
Q  9 atgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggcatattcta 108  Q
    |||||||||||| || ||||  |||| ||||||||||| |||||||||  || |||||||||| ||||||||||||||||||| || ||||||||| |||    
T  44235638 atgtttaatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagaccttctattttatccctcatgggcatatgcta 44235539  T
Q  109 tacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatcc 196  Q
    | ||| | ||||| ||||||||||| ||  ||||  |||||||| || | ||||| || || ||||| ||||| || ||||| |||||    
T  44235538 ttccttcgtggattctcaagattcccatctcattagtggaagtttctctatgggtgtttcttacctactatgttattggatttgatcc 44235451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 39576639 - 39576462
Alignment:
Q  4 tgcttatgtttaatggattggctgaactttcaatgaccattgcaaagcttcctagtttctacaagcaaagagaccttctattttatccttcttgggcata 103  Q
    ||||||||||||||||||| |||||||||||||||||| |||  | ||||||    || |||||||||||||||||||| || || ||||||||||||||    
T  39576639 tgcttatgtttaatggatttgctgaactttcaatgaccgttgtgaggcttcccgtgttttacaagcaaagagaccttctcttctacccttcttgggcata 39576540  T
Q  104 ttctatacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgt 181  Q
    |  | | ||| |||||||||| || || ||| | || |||   ||||  |||||||||   |||||||||||||||||    
T  39576539 tggtcttccttcatggatccttaaaatccctgtaacgtttgctgaagcagctgtttggacattcctcacctattatgt 39576462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 39549612 - 39549512
Alignment:
Q  96 tgggcatattctatacctgcatggatcctcaagattcctattacatttctggaagttgctgtttgggttttcctcacctattatgtaataggattcgatc 195  Q
    ||||||||| || | |||||||||||||| || || ||  | || ||| ||||||||||||||||||| ||||| ||||| ||||| || || |||||||    
T  39549612 tgggcatatgctcttcctgcatggatcctaaaaatccccttaacttttgtggaagttgctgtttgggtattccttacctactatgtcattggtttcgatc 39549513  T
Q  196 c 196  Q
    |    
T  39549512 c 39549512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 49771134 - 49771239
Alignment:
Q  59 tttctacaagcaaagagaccttctattttatccttcttgggcatattctatacctgcatggatcctcaagattcctattacatttctggaagttgctgtt 158  Q
    |||||| |||||||| ||||||||  |||  ||| |||||||||||||| | ||| | |||||||| ||||||||||| || ||| | ||||||| | ||    
T  49771134 tttctataagcaaagggaccttctgcttttccctgcttgggcatattctttgcctacttggatccttaagattcctataacctttgtagaagttggtatt 49771233  T
Q  159 tgggtt 164  Q
    ||||||    
T  49771234 tgggtt 49771239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 2150633 - 2150569
Alignment:
Q  63 tacaagcaaagagaccttctattttatccttcttgggcatattctatacctgcatggatcctcaa 127  Q
    |||||||||||||| ||||| || |||||||| ||||| |||||| | ||  |||||||||||||    
T  2150633 tacaagcaaagagatcttcttttctatccttcatgggcttattctcttccaccatggatcctcaa 2150569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University