View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7427_high_5 (Length: 464)
Name: NF7427_high_5
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 41383039 - 41382803
Alignment:
| Q |
17 |
attatctgaattcacgtcgatcaaaatctttaagtcattatcttatgtaagatggtaaaaatactccctccaaactataaccaacccatatataatccac |
116 |
Q |
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| T |
41383039 |
attatctgaattcacgttgatcaaaatctttaagtgattatcttatgtaagatggtaaaaatactccctccaaactatcaccaacccatatataatccac |
41382940 |
T |
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| Q |
117 |
taaattttggagtatccactgaaatcttatatagaagatggaagagtgtatagtgatgatgatgttgagctaggtgatattaataaaaatatcaattatg |
216 |
Q |
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| T |
41382939 |
taaattttggagtatccactgaaatcttatatagaagatggaagagtgtatagtgat---gatgttgagctaggtgatattaataaaaatatcaattatg |
41382843 |
T |
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| Q |
217 |
agaagaaaaaagagttagaatctcaattagtagtatctaa |
256 |
Q |
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| T |
41382842 |
agaagaaaaaagagtcagaatctcaattagtagtatctaa |
41382803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 336 - 453
Target Start/End: Complemental strand, 41382738 - 41382621
Alignment:
| Q |
336 |
ggatttgataattgaatagtatcattagtttattttgtcttataattttatcatgtttgatagggatatcatggaaggattcagttgccatcagagcatc |
435 |
Q |
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| T |
41382738 |
ggatttgataattgaatagtatcattagtttattttgtcttataattttatcatgtttgatagggatatcatggaaggattcagttgccatcagagcatc |
41382639 |
T |
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| Q |
436 |
ctttcaaacctccttcat |
453 |
Q |
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| T |
41382638 |
ctttcaaacctccttcat |
41382621 |
T |
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