View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7427_high_6 (Length: 453)
Name: NF7427_high_6
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 31706772 - 31706382
Alignment:
| Q |
18 |
acttgcagccaagaacttcttgctagaggaactgaattactcaaacgaactcgcaaaggtaattttaataaatcgagttttgagacactaatacttgttt |
117 |
Q |
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| T |
31706772 |
acttgcagccaagaacttcttgctagaggaactgaattactcaaacgaactcgcaaaggtaattttaataaatcgagttttgagacactaatacttgttt |
31706673 |
T |
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| Q |
118 |
tcatttgcaaaattgcaaaatgattaaactatatttggtgattgatatttgtaggtgatcttcactcgaaaatagtttctgtttatatacatcgaaccgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31706672 |
tcatttgcaaaattgcaaaatgattaaactatatttggtgattgatgtatgtaggtgatcttcactggaaaatagtttctgtttatatacatcgaaccgg |
31706573 |
T |
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| Q |
218 |
ccaggtaattttttgttctttcatattttagtagaaattgaaatatagttggttagtccattcatcaaatgctttcattcatttcaggtgatgctgaaaa |
317 |
Q |
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| T |
31706572 |
ccaggtaattttttgttctttcatattttagtagaaattgaaatatagttggttagtccattcatcaaatgcttgcattcatttcaggtgatgctgaaaa |
31706473 |
T |
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| Q |
318 |
tgaaaagcagacatgttgcaggaaccattacnnnnnnnnnnnngagtaagctataacaatatataacttaatttttccttgcaatatcata |
408 |
Q |
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| T |
31706472 |
tgaaaagcagacatgttgcaggaaccattacaaaaaagaaaaagagtaagctataacaatatataacttaatttttccttgcaatatcata |
31706382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 38269424 - 38269485
Alignment:
| Q |
170 |
aggtgatcttcactcgaaaatagtttctgtttatatacatcgaaccggccaggtaatttttt |
231 |
Q |
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| T |
38269424 |
aggtgatctacactggaaaatagtttctgtttacatacatcgaacgggacatgtaaattttt |
38269485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 38269548 - 38269593
Alignment:
| Q |
297 |
catttcaggtgatgctgaaaatgaaaagcagacatgttgcaggaac |
342 |
Q |
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|||||||||| |||||||||||||| |||| ||||||||||||||| |
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| T |
38269548 |
catttcaggtaatgctgaaaatgaagagcaaacatgttgcaggaac |
38269593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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