View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7427_high_7 (Length: 443)
Name: NF7427_high_7
Description: NF7427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7427_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 360
Target Start/End: Original strand, 19722521 - 19722877
Alignment:
| Q |
7 |
tttggtgttatgaattttttcatagtagctatgagattctaaatgtagcaaaaggaaataatttaagaagtttaattgatttctataatcatcatcctct |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19722521 |
tttggtgttatgaattttttcatagtagctatgagattccaaatgtagcaaaagaaaataatttaaaaagtttaattgatttctataatcatcatcctct |
19722620 |
T |
|
| Q |
107 |
attcatacaaatacaaatgttcaaaatgaataatccacatgtcaatctaaaatcctctaacaacttcaatgccatgtgtcc--ttttttagcaaaaacat |
204 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19722621 |
attcatacaagtgcaaatgttcaaaatgaatattccacatgtcaatctaaaatcctctaacaacttcaatgccatgtgtccttttttttagcaaaaacat |
19722720 |
T |
|
| Q |
205 |
cacagta-nnnnnnnnctctacaaaagtcacacgaattttttatttatagaaagagaatcatatattgatatgtgcctaataaaatcacattaacatgtg |
303 |
Q |
| |
|
||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
19722721 |
cacagtatttttttctttctacaaaagtcacacaaattttctatttatagaaagagaatcatatattaacatgtgcctaataaaatcacattaacatgtg |
19722820 |
T |
|
| Q |
304 |
attaattgtttttgttagacgtaactgtaattttttattgtagctagacatacatat |
360 |
Q |
| |
|
||||||||||||||||||||||||| || | ||||| |||||| ||||||||||||| |
|
|
| T |
19722821 |
attaattgtttttgttagacgtaaccgtgagtttttgttgtagttagacatacatat |
19722877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 22731961 - 22732020
Alignment:
| Q |
43 |
ttctaaatgtagcaaaaggaaataatttaagaagtttaattgatttctataatcatcatc |
102 |
Q |
| |
|
||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
22731961 |
ttctaaatgtagcaaaaggcaataatttaaaatgtttaattgatttctataatcatcatc |
22732020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University